CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.55786.1.S1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At4g09510: beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative (HF=5e-35)

Module size 6 genes

NF 0.53

%ile 83.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 80.5 0.94 PtpAffx.55786.1.S1_s_at CA825382 hypothetical protein - 5e-35 At4g09510 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative O.I. H.G. S.X.
0.73 93.6 0.95 PtpAffx.111048.1.S1_at BU883776 hypothetical protein - 2e-94 At2g22480 PFK5 (PHOSPHOFRUCTOKINASE 5) O.I. H.G. S.X.
0.53 80.5 0.95 PtpAffx.11524.3.S1_at CV272635 hypothetical protein - 4e-28 At5g23250 succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative O.I. H.G. S.X.
0.50 78.6 0.96 PtpAffx.5890.2.S1_at CF232083 hypothetical protein - 5e-3 At5g17770 ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1) O.I. H.G. S.X.
0.46 73.7 0.96 PtpAffx.7625.4.S1_a_at CX174671 hypothetical protein - 5e-24 At1g53240 malate dehydrogenase (NAD), mitochondrial O.I. H.G. S.X.
0.25 43.6 0.95 PtpAffx.4971.2.S1_a_at CV252275 hypothetical protein - 3e-49 At5g08160 ATPK3 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.1 99.0 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
7.4 98.2 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.5 96.1 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.8 94.9 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.3 93.7 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g09510, orthologous to the query gene, PtpAffx.55786.1.S1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.39 48.4 At4g09510 826535 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative F:catalytic activity, beta-fructofuranosidase activity;P:biological_process unknown;C:cellular_component unknown;OPB O.I. H.G. S.X.
0.53 68.6 At2g05790 815130 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO O.I. H.G. S.X.
0.53 68.6 At2g19170 816434 SLP3 Encodes a novel subtilisin-like serine protease. O.I. H.G. S.X.
0.50 65.3 At3g13560 820558 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PFO O.I. H.G. S.X.
0.50 65.3 At4g39900 830149 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.46 59.8 At5g61130 836234 PDCB1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 1) Encodes a plasmodesmatal localized protein with callose binding activity. The function of PDCB1 is unknown but overexpression leads to the hyperaccumulation of callose. O.I. H.G. S.X.
0.41 52.4 At5g51560 835230 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. H.G. S.X.
0.40 50.8 At1g10850 3766694 ATP binding / protein binding / protein kinase/ protein serine/threonine kinase F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. H.G. S.X.
0.35 41.6 At1g69420 843274 zinc finger (DHHC type) family protein F:zinc ion binding;P:biological_process unknown;C:endomembrane system;MOFP O.I. H.G. S.X.
0.32 35.7 At2g24630 816999 ATCSLC08 encodes a gene similar to cellulose synthase O.I. H.G. S.X.
0.26 24.4 At1g11820 837730 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PO O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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