CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.55455.1.S1_a_at

Gene name beta-ketoacyl-coa synthase family protein /// beta-ketoacyl-coa synthase family protein
Homology with Arabidopsis Similar to At1g04220: KCS2 (3-KETOACYL-COA SYNTHASE 2) (HF=4e-12)

Module size 6 genes

NF 0.36

%ile 61.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.92 PtpAffx.55455.1.S1_a_at CV242141 beta-ketoacyl-coa synthase family protein /// beta-ketoacyl-coa synthase family protein - 4e-12 At1g04220 KCS2 (3-KETOACYL-COA SYNTHASE 2) O.I. H.G. S.X.
0.53 80.5 0.91 PtpAffx.7369.1.A1_at BP930064 hypothetical protein - 2e-5 At5g64510 unknown protein O.I. H.G. S.X.
0.48 75.4 0.90 PtpAffx.23797.2.S1_at CV248730 hypothetical protein - 7e-16 At4g20870 FAH2 (FATTY ACID HYDROXYLASE 2) O.I. H.G. S.X.
0.29 50.5 0.91 Ptp.5292.1.S1_s_at CV249488 hypothetical protein - 5e-1 At1g55330 AGP21 O.I. H.G. S.X.
0.26 45.2 0.92 Ptp.4040.1.S1_s_at BU861549 hypothetical protein - 2e+0 At4g21000 ACA6 (ALPHA CARBONIC ANHYDRASE 6) O.I. H.G. S.X.
0.11 18.1 0.92 Ptp.6875.1.S1_s_at CV234546 hypothetical protein - 1e-22 At1g31812 ACBP6 (acyl-CoA-binding protein 6) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	99.2	0.92	PtpAffx.55455.1.S1_a_at	CV242141	beta-ketoacyl-coa synthase family protein /// beta-ketoacyl-coa synthase family protein	-	4e-12	At1g04220	KCS2 (3-KETOACYL-COA SYNTHASE 2)	O.I.	H.G.	S.X.
0.53	80.5	0.91	PtpAffx.7369.1.A1_at	BP930064	hypothetical protein	-	2e-5	At5g64510	unknown protein	O.I.	H.G.	S.X.
0.48	75.4	0.90	PtpAffx.23797.2.S1_at	CV248730	hypothetical protein	-	7e-16	At4g20870	FAH2 (FATTY ACID HYDROXYLASE 2)	O.I.	H.G.	S.X.
0.29	50.5	0.91	Ptp.5292.1.S1_s_at	CV249488	hypothetical protein	-	5e-1	At1g55330	AGP21	O.I.	H.G.	S.X.
0.26	45.2	0.92	Ptp.4040.1.S1_s_at	BU861549	hypothetical protein	-	2e+0	At4g21000	ACA6 (ALPHA CARBONIC ANHYDRASE 6)	O.I.	H.G.	S.X.
0.11	18.1	0.92	Ptp.6875.1.S1_s_at	CV234546	hypothetical protein	-	1e-22	At1g31812	ACBP6 (acyl-CoA-binding protein 6)	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.46	73.7	0.81	PtpAffx.114914.1.A1_at	CV239757	-	-	2e+0	At5g63340	unknown protein	O.I.	H.G.	S.X.
0.44	71.9	0.84	PtpAffx.207928.1.S1_at	pmrna15735	hypothetical protein	-	1e-19	At5g49580	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.
0.44	71.9	0.92	PtpAffx.139198.1.A1_at	CV244585	hypothetical protein	-	2e-19	At1g14310	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.
0.40	67.0	0.82	PtpAffx.56302.1.A1_at	CV270261	-	-	6e+0	At4g12617	unknown protein	O.I.	H.G.	S.X.
0.40	67.0	0.84	PtpAffx.113941.1.A1_at	CV277923	hypothetical protein	-	2e-21	At5g45040	cytochrome c6 (ATC6)	O.I.	H.G.	S.X.
0.40	67.0	0.84	PtpAffx.20004.1.S1_at	BI126043	-	-	2e+1	At5g27520	PNC2 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 2)	O.I.	H.G.	S.X.
0.36	61.6	0.83	PtpAffx.6788.1.S1_at	CK115004	-	-	7e+0	At3g44784	unknown protein	O.I.	H.G.	S.X.
0.36	61.6	0.86	PtpAffx.57734.1.S1_at	DN486150	-	-	3e-1	At1g56200	emb1303 (embryo defective 1303)	O.I.	H.G.	S.X.
0.36	61.6	0.87	PtpAffx.218828.1.S1_at	pmrna34567	hypothetical protein /// hypothetical protein /// hypothetical protein /// cc-nbs resistance protein /// hypothetical protein /// NBS resistance protein /// hypothetical protein /// hypothetical protein	-	1e+0	At5g39950	ATTRX2 (THIOREDOXIN 2)	O.I.	H.G.	S.X.
0.35	59.7	0.83	PtpAffx.29095.2.S1_at	CV255787	hypothetical protein	-	1e-1	At3g13500	unknown protein	O.I.	H.G.	S.X.
0.35	59.7	0.84	PtpAffx.4744.1.A1_at	CV276459	hypothetical protein	-	3e+0	At3g04130	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.
0.35	59.7	0.86	PtpAffx.53238.1.S1_at	DN485358	-	-	4e-1	At2g45140	PVA12 (PLANT VAP HOMOLOG 12)	O.I.	H.G.	S.X.
0.33	57.5	0.91	PtpAffx.214821.1.S1_at	pmrna28690	hypothetical protein	-	5e-54	At1g53040	unknown protein	O.I.	H.G.	S.X.
0.33	57.5	0.92	PtpAffx.58773.1.A1_at	CK091196	hypothetical protein	-	4e-16	At1g78290	-	O.I.	H.G.	S.X.
0.32	55.2	0.89	PtpAffx.5622.2.S1_s_at	CV241605	hypothetical protein	-	2e-9	At2g22830	SQE2 (squalene epoxidase 2)	O.I.	H.G.	S.X.
0.31	53.7	0.92	PtpAffx.81285.2.S1_at	BP922230	hypothetical protein	-	5e-10	At5g64510	unknown protein	O.I.	H.G.	S.X.
0.30	52.0	0.89	PtpAffx.209684.1.S1_at	pmrna19114	hypothetical protein	-	2e+0	At1g03982	-	O.I.	H.G.	S.X.
0.29	50.5	0.83	PtpAffx.213141.1.S1_s_at	pmrna25714	hypothetical protein	-	3e-1	At2g43290	MSS3 (multicopy suppressors of snf4 deficiency in yeast 3)	O.I.	H.G.	S.X.
0.29	50.5	0.89	Ptp.5017.1.S1_at	CV276285	hypothetical protein	-	1e-10	At3g18040	MPK9 (MAP KINASE 9)	O.I.	H.G.	S.X.
0.29	50.5	0.91	PtpAffx.23401.1.S1_at	DN486608	hypothetical protein	-	2e-7	At1g65560	allyl alcohol dehydrogenase, putative	O.I.	H.G.	S.X.
0.27	47.1	0.86	Ptp.7769.1.S1_at	DN498953	-	-	4e+0	At2g34186	unknown protein	O.I.	H.G.	S.X.
0.25	43.6	0.89	PtpAffx.41647.1.S1_a_at	CK094323	hypothetical protein	-	3e-107	At1g19920	APS2	O.I.	H.G.	S.X.
0.25	43.6	0.92	Ptp.574.1.A1_at	CK088966	hypothetical protein	-	1e+0	At4g33670	L-galactose dehydrogenase (L-GalDH)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.3 96.9 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.9 96.5 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.5 96.1 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.6 94.5 GSM372099 Clone3200_LPI5_N+_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6 94.5 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
5.3	96.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6	94.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	PtpAffx.55455.1.S1_a_at
Gene name	beta-ketoacyl-coa synthase family protein /// beta-ketoacyl-coa synthase family protein
Homology with Arabidopsis	Similar to At1g04220: KCS2 (3-KETOACYL-COA SYNTHASE 2) (HF=4e-12)
Module size	6 genes
NF	0.36
%ile	61.9

Co-expression analysis

Gene ID PtpAffx.55455.1.S1_a_at Gene name beta-ketoacyl-coa synthase family protein /// beta-ketoacyl-coa synthase family protein Homology with ArabidopsisSimilar to At1g04220: KCS2 (3-KETOACYL-COA SYNTHASE 2) (HF=4e-12) Module size 6 genes NF 0.36 %ile 61.9

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.55455.1.S1_a_at

Gene name beta-ketoacyl-coa synthase family protein /// beta-ketoacyl-coa synthase family protein
Homology with Arabidopsis Similar to At1g04220: KCS2 (3-KETOACYL-COA SYNTHASE 2) (HF=4e-12)

Module size 6 genes

NF 0.36

%ile 61.9

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays