Co-expression analysis

Gene ID	PtpAffx.55455.1.S1_a_at
Gene name	beta-ketoacyl-coa synthase family protein /// beta-ketoacyl-coa synthase family protein
Homology with Arabidopsis	Similar to At1g04220: KCS2 (3-KETOACYL-COA SYNTHASE 2) (HF=4e-12)
Module size	6 genes
NF	0.36
%ile	61.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.92	PtpAffx.55455.1.S1_a_at	CV242141	beta-ketoacyl-coa synthase family protein /// beta-ketoacyl-coa synthase family protein	-	4e-12	At1g04220	KCS2 (3-KETOACYL-COA SYNTHASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.91	PtpAffx.7369.1.A1_at	BP930064	hypothetical protein	-	2e-5	At5g64510	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.90	PtpAffx.23797.2.S1_at	CV248730	hypothetical protein	-	7e-16	At4g20870	FAH2 (FATTY ACID HYDROXYLASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.91	Ptp.5292.1.S1_s_at	CV249488	hypothetical protein	-	5e-1	At1g55330	AGP21	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.92	Ptp.4040.1.S1_s_at	BU861549	hypothetical protein	-	2e+0	At4g21000	ACA6 (ALPHA CARBONIC ANHYDRASE 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.92	Ptp.6875.1.S1_s_at	CV234546	hypothetical protein	-	1e-22	At1g31812	ACBP6 (acyl-CoA-binding protein 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	96.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6	94.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the wheat gene, Ta.7498.2.A1_a_at, orthologous to the query gene, PtpAffx.55455.1.S1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.0	Ta.7498.2.A1_a_at	At1g04220	-	-	6e-11	At5g43760	KCS20 (3-KETOACYL-COA SYNTHASE 20)	O.I.	H.G.	S.X.	Please select
0.71	88.0	Ta.11488.1.S1_s_at	At1g04220	-	-	3e-24	At3g51550	FER (FERONIA)	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.14561.1.S1_at	At1g04220	-	-	3e-1	At1g15885	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.11488.1.S1_x_at	At1g04220	-	-	3e-24	At3g51550	FER (FERONIA)	O.I.	H.G.	S.X.	Please select
0.55	76.8	Ta.14561.2.S1_a_at	At1g04220	-	-	4e-51	At3g51550	FER (FERONIA)	O.I.	H.G.	S.X.	Please select
0.55	76.8	Ta.823.1.S1_a_at	At1g04220	-	-	3e-7	At4g34440	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.7498.1.A1_at	At1g04220	-	-	7e-22	At2g26640	KCS11 (3-KETOACYL-COA SYNTHASE 11)	O.I.	H.G.	S.X.	Please select
0.43	62.2	Ta.27685.1.S1_at	At1g04220	-	-	8e+0	At4g27690	VPS26B (VACUOLAR PROTEIN SORTING 26B)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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