CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.55455.1.S1_a_at

Gene name beta-ketoacyl-coa synthase family protein /// beta-ketoacyl-coa synthase family protein
Homology with Arabidopsis Similar to At1g04220: KCS2 (3-KETOACYL-COA SYNTHASE 2) (HF=4e-12)

Module size 6 genes

NF 0.36

%ile 61.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.92 PtpAffx.55455.1.S1_a_at CV242141 beta-ketoacyl-coa synthase family protein /// beta-ketoacyl-coa synthase family protein - 4e-12 At1g04220 KCS2 (3-KETOACYL-COA SYNTHASE 2) O.I. H.G. S.X.
0.53 80.5 0.91 PtpAffx.7369.1.A1_at BP930064 hypothetical protein - 2e-5 At5g64510 unknown protein O.I. H.G. S.X.
0.48 75.4 0.90 PtpAffx.23797.2.S1_at CV248730 hypothetical protein - 7e-16 At4g20870 FAH2 (FATTY ACID HYDROXYLASE 2) O.I. H.G. S.X.
0.29 50.5 0.91 Ptp.5292.1.S1_s_at CV249488 hypothetical protein - 5e-1 At1g55330 AGP21 O.I. H.G. S.X.
0.26 45.2 0.92 Ptp.4040.1.S1_s_at BU861549 hypothetical protein - 2e+0 At4g21000 ACA6 (ALPHA CARBONIC ANHYDRASE 6) O.I. H.G. S.X.
0.11 18.1 0.92 Ptp.6875.1.S1_s_at CV234546 hypothetical protein - 1e-22 At1g31812 ACBP6 (acyl-CoA-binding protein 6) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.3 96.9 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.9 96.5 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.5 96.1 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.6 94.5 GSM372099 Clone3200_LPI5_N+_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6 94.5 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g04220, orthologous to the query gene, PtpAffx.55455.1.S1_a_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.21 15.8 At1g04220 839578 KCS2 (3-KETOACYL-COA SYNTHASE 2) Encodes KCS2, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. H.G. S.X.
0.36 43.6 At5g13580 831202 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:membrane;BOMAFPV O.I. H.G. S.X.
0.33 38.1 At4g36610 829813 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:biological_process unknown;C:endomembrane system;BOMPFA O.I. H.G. S.X.
0.33 38.1 At5g41040 834106 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBO O.I. H.G. S.X.
0.13 5.8 At4g17280 827442 - F:unknown;P:multicellular organismal development;C:membrane;P O.I. H.G. S.X.
0.13 5.8 At3g10340 820196 PAL4 (Phenylalanine ammonia-lyase 4) F:ammonia-lyase activity, ammonia ligase activity, catalytic activity;P:L-phenylalanine catabolic process, biosynthetic process;C:cytoplasm;BPOFMA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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