Co-expression analysis

Gene ID	PtpAffx.55242.1.S1_at
Gene name	beta-ketoacyl-coa synthase family protein
Homology with Arabidopsis	Similar to At2g26250: KCS10 (3-KETOACYL-COA SYNTHASE 10) (HF=8e-17)
Module size	6 genes
NF	0.10
%ile	20.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	84.9	0.90	PtpAffx.55242.1.S1_at	CV236376	beta-ketoacyl-coa synthase family protein	-	8e-17	At2g26250	KCS10 (3-KETOACYL-COA SYNTHASE 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.90	PtpAffx.49413.1.S1_at	CX178932	hypothetical protein	-	8e-2	At1g10657	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.91	PtpAffx.219605.1.S1_at	pmrna35564	hypothetical protein	-	2e-2	At1g58440	XF1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.90	PtpAffx.95882.2.A1_s_at	CV227861	hypothetical protein	-	2e+0	At2g20180	PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.94	PtpAffx.249.124.A1_x_at	CV282001	hypothetical protein	-	1e-7	At2g47400	CP12-1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.90	PtpAffx.217577.1.S1_at	pmrna32901	glutamate-gated kainate-type ion channel receptor subunit GluR5	-	2e-2	At2g24720	ATGLR2.2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	96.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8	92.1	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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