Co-expression analysis

Gene ID	PtpAffx.5499.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g22140: DNA binding / protein binding / zinc ion binding (HF=4e-1)
Module size	24 genes
NF	0.29
%ile	51.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	100.0	0.87	PtpAffx.5499.1.A1_at	CV245700	-	-	4e-1	At4g22140	DNA binding / protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.92	PtpAffx.45190.1.A1_at	CN522062	hypothetical protein	-	1e+0	At2g04370	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.92	PtpAffx.212348.1.S1_at	pmrna24204	hypothetical protein	-	1e-14	At5g49650	xylulose kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.91	PtpAffx.222297.1.S1_at	pmrna39615	hypothetical protein	-	6e-5	At2g43490	RAB GTPase activator	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.90	PtpAffx.5094.1.A1_at	CV278851	-	-	2e-8	At1g70782	CPuORF28 (Conserved peptide upstream open reading frame 28)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.92	PtpAffx.89051.1.A1_at	CV240865	hypothetical protein	-	1e-10	At3g53710	AGD6	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	0.92	PtpAffx.160545.1.A1_at	DN492056	glutathione peroxidase	-	3e-11	At3g63080	ATGPX5 (glutathione peroxidase 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.91	PtpAffx.107925.1.A1_at	DN485210	hypothetical protein	-	8e-1	At5g22380	anac090 (Arabidopsis NAC domain containing protein 90)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.92	PtpAffx.59806.1.A1_at	CV266955	hypothetical protein	-	1e-8	At5g09590	MTHSC70-2 (MITOCHONDRIAL HSP70 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.93	PtpAffx.77105.1.S1_s_at	CN524713	hypothetical protein	-	3e-5	At3g59290	epsin N-terminal homology (ENTH) domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.92	Ptp.774.1.A1_at	CV232048	-	-	6e-6	At2g18250	ATCOAD (4-phosphopantetheine adenylyltransferase)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.93	PtpAffx.5890.1.S1_at	CV230515	hypothetical protein	-	4e-15	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.93	PtpAffx.89820.1.A1_at	CV243839	hypothetical protein	-	1e+0	At5g54580	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.91	PtpAffx.19143.1.A1_at	BP932858	hypothetical protein	-	6e-9	At2g01480	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.92	PtpAffx.112232.1.S1_at	CN549828	hypothetical protein	-	9e-61	At4g32140	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.93	PtpAffx.1117.1.A1_at	CV245601	-	-	3e-1	At4g09070	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.92	PtpAffx.9921.1.A1_a_at	CV242822	histone ubiquitination proteins group	-	6e-85	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.92	PtpAffx.128107.1.A1_at	CV231053	hypothetical protein	-	1e-13	At3g09320	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.94	PtpAffx.205178.1.S1_s_at	pmrna10254	hypothetical protein	-	4e-27	At5g65000	nucleotide-sugar transporter family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.92	PtpAffx.8013.1.A1_at	BI784470	hypothetical protein	-	6e+0	At5g61440	ACHT5 (ATYPICAL CYS HIS RICH THIOREDOXIN 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.94	Ptp.4510.1.S1_at	CV261413	hypothetical protein	-	1e-8	At1g14140	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.93	PtpAffx.58297.1.S1_at	CX171312	hypothetical protein	-	6e-39	At1g12990	glycosyl transferase family 17 protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.92	PtpAffx.40097.1.S1_at	CV262442	hypothetical protein	-	5e-27	At1g63050	membrane bound O-acyl transferase (MBOAT) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.92	PtpAffx.210917.1.S1_at	pmrna21450	hypothetical protein	-	3e-2	At1g54920	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	93.2	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.4	90.4	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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