Co-expression analysis

Gene ID	PtpAffx.5486.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g20930: - (HF=1e-32)
Module size	6 genes
NF	0.32
%ile	56.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	97.0	0.95	PtpAffx.5486.1.S1_at	CV256117	hypothetical protein	-	1e-32	At2g20930	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.95	PtpAffx.12697.1.S1_at	CV278873	hypothetical protein	-	1e-1	At3g26340	20S proteasome beta subunit E, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.95	PtpAffx.50674.1.A1_a_at	CV264554	hypothetical protein	-	3e-51	At2g25950	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.96	PtpAffx.21786.1.S1_at	CV234229	hypothetical protein	-	3e-27	At5g66410	PLP3b (Phosducin-like protein 3 homolog)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.96	Ptp.2608.1.S1_s_at	CV276221	hypothetical protein	-	7e-5	At1g64220	TOM7-2 (TRANSLOCASE OF OUTER MEMBRANE 7 KDA SUBUNIT 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.95	PtpAffx.7256.1.S1_at	CV266031	-	-	2e-90	At1g12910	ATAN11 (ANTHOCYANIN11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.7	98.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
6.4	97.7	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.9	97.4	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.2	96.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.7	96.3	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.4	95.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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