Co-expression analysis

Gene ID PtpAffx.54796.1.S1_at
Gene name aminophospholipid ATPase /// aminophospholipid ATPase
Homology with ArabidopsisSimilar to At1g47970: unknown protein (HF=3e-1)
Module size 9 genes
NF 0.58
%ile 88.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4268.60.96PtpAffx.54796.1.S1_atDN497368aminophospholipid ATPase /// aminophospholipid ATPase-3e-1At1g47970unknown proteinO.I.H.G.S.X.
0.7192.60.97PtpAffx.47744.2.S1_atCK093950hypothetical protein-3e-1At4g32900aminoacyl-tRNA hydrolaseO.I.H.G.S.X.
0.6488.40.97PtpAffx.5159.2.S1_atCA821209hypothetical protein-1e-12At2g32720CB5-B (CYTOCHROME B5 ISOFORM B)O.I.H.G.S.X.
0.6086.00.97PtpAffx.193.1.S1_atDN487443hypothetical protein-4e-3At4g20290unknown proteinO.I.H.G.S.X.
0.5984.90.96Ptp.3169.1.S1_a_atBU814712hypothetical protein-1e-1At1g14870-O.I.H.G.S.X.
0.5784.20.97Ptp.3169.2.S1_a_atCK104417hypothetical protein-9e-2At1g14870-O.I.H.G.S.X.
0.5582.20.96PtpAffx.117578.1.S1_atBU886543hypothetical protein-3e-1At5g57240ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C)O.I.H.G.S.X.
0.5078.60.96PtpAffx.130848.1.A1_atBU865649AP2 domain-containing transcription factor /// AP2 domain-containing transcription factor-4e-1At4g30450glycine-rich proteinO.I.H.G.S.X.
0.4673.70.95PtpAffx.129030.1.S1_s_atCK115249hypothetical protein-7e-1At3g07260forkhead-associated domain-containing protein / FHA domain-containing proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.691.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327281Populus balsamifera_20071015_Seedling_continuous_light_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327359Populus balsamifera_20071015_Seedling_continuous_light_6d_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.289.3GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.188.6GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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