Co-expression analysis

Gene ID PtpAffx.54769.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g16370: GDSL-motif lipase/hydrolase family protein (HF=2e-7)
Module size 20 genes
NF 0.39
%ile 66.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8497.10.88PtpAffx.54769.1.A1_atDN488575hypothetical protein-2e-7At3g16370GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.
0.6791.10.91PtpAffx.217986.1.S1_s_atpmrna33481hypothetical protein-1e-1At5g35810-O.I.H.G.S.X.
0.5078.60.91PtpAffx.217639.1.S1_s_atpmrna32986hypothetical protein-5e-3At5g40840SYN2O.I.H.G.S.X.
0.4673.70.93Ptp.7898.1.S1_atBU811912--9e+0At5g38370zinc ion bindingO.I.H.G.S.X.
0.4471.90.92Ptp.6944.1.S1_atBU862605hypothetical protein-4e-6At5g18590kelch repeat-containing proteinO.I.H.G.S.X.
0.4471.90.94Ptp.86.1.S1_atCK088799hypothetical protein-3e-11At1g14840ATMAP70-4 (microtubule-associated proteins 70-4)O.I.H.G.S.X.
0.4471.90.94PtpAffx.105685.1.S1_atCK102491--1e-6At4g33350chloroplast inner membrane import protein Tic22, putativeO.I.H.G.S.X.
0.4268.60.91PtpAffx.149230.1.S1_atCF233558hypothetical protein-1e-24At2g45770CPFTSYO.I.H.G.S.X.
0.4167.70.93PtpAffx.212516.1.S1_atpmrna24511hypothetical protein-1e+0At4g04840methionine sulfoxide reductase domain-containing protein / SeIR domain-containing proteinO.I.H.G.S.X.
0.4067.00.93Ptp.1114.1.S1_atAJ773836hypothetical protein-1e-44At2g26580YAB5 (YABBY5)O.I.H.G.S.X.
0.3863.70.89PtpAffx.41619.1.S1_atBU830007hypothetical protein-4e-5At5g42765-O.I.H.G.S.X.
0.3863.70.91PtpAffx.274.2.S1_atCK105866hypothetical protein-2e-15At1g74970RPS9 (RIBOSOMAL PROTEIN S9)O.I.H.G.S.X.
0.3863.70.90Ptp.2971.2.A1_atDN488746hypothetical protein-1e-2At1g22700tetratricopeptide repeat (TPR)-containing proteinO.I.H.G.S.X.
0.3458.30.91PtpAffx.201343.1.S1_atpmrna2661hypothetical protein-2e+0At3g19130ATRBP47B (RNA-binding protein 47B)O.I.H.G.S.X.
0.3255.20.92PtpAffx.9811.1.A1_atBU811742--2e-28At1g22630unknown proteinO.I.H.G.S.X.
0.3255.20.89PtpAffx.39000.1.A1_atDN487156hypothetical protein-1e+0At1g28306-O.I.H.G.S.X.
0.2747.10.92Ptp.2150.1.S1_atCK089522hypothetical protein-2e+0At4g09965unknown proteinO.I.H.G.S.X.
0.2645.20.93PtpAffx.37524.2.S1_a_atDN489186hypothetical protein-2e+0At4g31940CYP82C4O.I.H.G.S.X.
0.2034.60.91Ptp.1664.1.A1_atCK092776--1e+0At5g16286unknown proteinO.I.H.G.S.X.
0.1626.90.93PtpAffx.86646.1.S1_atBU891442--2e+0At5g51210OLEO3 (OLEOSIN3)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.289.3GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM328077Populus x canescens leaf control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.785.5GSM372100Clone3200_LPI5_N+_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.684.5GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.583.5GSM328063Populus x canescens leaf control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.583.5GSM372099Clone3200_LPI5_N+_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage