Co-expression analysis

Gene ID PtpAffx.5452.3.A1_at
Gene name
Homology with ArabidopsisSimilar to At2g19720: rps15ab (ribosomal protein S15A B) (HF=7e-24)
Module size 12 genes
NF 0.22
%ile 40.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7192.60.91PtpAffx.5452.3.A1_atCV281348--7e-24At2g19720rps15ab (ribosomal protein S15A B)O.I.H.G.S.X.
0.6187.00.94PtpAffx.205970.1.S1_atpmrna11840hypothetical protein-8e-1At5g09750HEC3 (HECATE 3)O.I.H.G.S.X.
0.3357.50.92PtpAffx.210427.1.S1_atpmrna20477hypothetical protein-1e+0At3g05710SYP43 (SYNTAXIN OF PLANTS 43)O.I.H.G.S.X.
0.2238.30.97Ptp.8000.1.S1_atDN484105hypothetical protein-0Atmg01190-O.I.H.G.S.X.
0.2034.60.94PtpAffx.148864.1.S1_atBI128735hypothetical protein-4e-37At2g46090diacylglycerol kinase family proteinO.I.H.G.S.X.
0.1830.80.95Ptp.6150.1.S1_s_atBU869632hypothetical protein-3e-16At4g13520SMAP1 (SMALL ACIDIC PROTEIN 1)O.I.H.G.S.X.
0.1729.10.94Ptp.4499.1.S1_atCN519933hypothetical protein-3e-8At5g55640unknown proteinO.I.H.G.S.X.
0.1729.10.96Ptp.1492.1.S1_s_atCV271929hypothetical protein-4e-33At3g16640TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)O.I.H.G.S.X.
0.1525.30.94PtpAffx.454.1.A1_a_atCV247213--6e-4At1g20440COR47 (COLD-REGULATED 47)O.I.H.G.S.X.
0.1423.50.93PtpAffx.207423.1.S1_atpmrna14732hypothetical protein-3e+0At4g28703-O.I.H.G.S.X.
0.1321.60.96PtpAffx.21710.1.S1_x_atCV230014hypothetical protein-8e-120At1g10630ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F)O.I.H.G.S.X.
0.1219.60.92PtpAffx.70613.1.S1_atAJ769236hypothetical protein-5e-28At2g16710hesB-like domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.892.1GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.583.5GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.583.5GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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