CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.54366.1.A1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At4g31820: ENP (ENHANCER OF PINOID) (HF=7e-3)

Module size 12 genes

NF 0.33

%ile 58.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 0.90 PtpAffx.54366.1.A1_at CK087841 hypothetical protein - 7e-3 At4g31820 ENP (ENHANCER OF PINOID) O.I. H.G. S.X.
0.48 75.4 0.93 PtpAffx.94841.1.A1_at CV269108 hypothetical protein - 2e+0 At1g27950 LTPG1 (GLYCOSYLPHOSPHATIDYLINOSITOL-ANCHORED LIPID PROTEIN TRANSFER 1) O.I. H.G. S.X.
0.42 68.6 0.94 PtpAffx.12086.2.A1_at BP933599 hypothetical protein - 7e-14 At5g19750 peroxisomal membrane 22 kDa family protein O.I. H.G. S.X.
0.38 63.7 0.94 PtpAffx.211939.1.S1_s_at pmrna23444 hypothetical protein - 1e-37 At2g04280 unknown protein O.I. H.G. S.X.
0.38 63.7 0.93 PtpAffx.11324.1.A1_at CV270661 hypothetical protein - 5e-19 At3g24570 peroxisomal membrane 22 kDa family protein O.I. H.G. S.X.
0.36 61.6 0.93 PtpAffx.3647.1.A1_at CV230293 hypothetical protein - 9e-5 At2g26680 - O.I. H.G. S.X.
0.28 50.5 0.94 Ptp.5533.1.S1_at CV283037 hypothetical protein - 4e-36 At5g20720 CPN20 (CHAPERONIN 20) O.I. H.G. S.X.
0.27 47.1 0.93 Ptp.744.1.A1_at CV257858 hypothetical protein - 2e-34 At3g49470 NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2) O.I. H.G. S.X.
0.25 43.6 0.93 PtpAffx.90782.1.S1_s_at CK091819 hypothetical protein - 2e+0 At1g06920 OFP4 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4) O.I. H.G. S.X.
0.25 43.6 0.94 Ptp.3842.1.A1_a_at CV256192 hypothetical protein - 1e-1 At5g13470 unknown protein O.I. H.G. S.X.
0.23 40.5 0.95 Ptp.5030.1.A1_x_at DN485279 hypothetical protein - 4e-64 At1g77590 LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9) O.I. H.G. S.X.
0.16 26.9 0.92 Ptp.7553.1.S1_s_at CV265691 - - 5e-85 At1g75330 OTC (ORNITHINE CARBAMOYLTRANSFERASE) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.9 96.5 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.9 96.5 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1 88.6 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0 88.0 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0 88.0 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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