Co-expression analysis

Gene ID PtpAffx.54313.2.S1_a_at
Gene name
Homology with ArabidopsisSimilar to At2g34790: MEE23 (MATERNAL EFFECT EMBRYO ARREST 23) (HF=6e-4)
Module size 8 genes
NF 0.43
%ile 72.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5984.90.92PtpAffx.54313.2.S1_a_atBU895504--6e-4At2g34790MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)O.I.H.G.S.X.
0.5984.90.93PtpAffx.142314.1.S1_atCK102710hypothetical protein-2e-14At4g20430subtilase family proteinO.I.H.G.S.X.
0.4774.60.93PtpAffx.223595.1.S1_s_atpmrna41658cytochrome P450 /// cytochrome P450-1e+0At2g28400unknown proteinO.I.H.G.S.X.
0.4471.90.93PtpAffx.39069.1.S1_atCK097783hypothetical protein-1e+0At4g00850GIF3 (GRF1-INTERACTING FACTOR 3)O.I.H.G.S.X.
0.3863.70.93Ptp.6523.1.S1_atBI131733hypothetical protein-3e-1At4g34790auxin-responsive family proteinO.I.H.G.S.X.
0.3357.50.94PtpAffx.201250.1.S1_s_atpmrna2478hypothetical protein-1e-1At4g32330-O.I.H.G.S.X.
0.2850.50.93PtpAffx.224735.1.S1_s_atpmrna43551hypothetical protein-2e-7At3g45860receptor-like protein kinase, putativeO.I.H.G.S.X.
0.2747.10.94PtpAffx.58827.1.S1_atCK089146multidrug/pheromone exporter, MDR family, ABC transporter family-5e-7At2g36910ABCB1 (ATP BINDING CASSETTE SUBFAMILY B1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.497.0GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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