Co-expression analysis

Gene ID	PtpAffx.54313.2.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At2g34790: MEE23 (MATERNAL EFFECT EMBRYO ARREST 23) (HF=6e-4)
Module size	8 genes
NF	0.43
%ile	72.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	84.9	0.92	PtpAffx.54313.2.S1_a_at	BU895504	-	-	6e-4	At2g34790	MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	0.93	PtpAffx.142314.1.S1_at	CK102710	hypothetical protein	-	2e-14	At4g20430	subtilase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.93	PtpAffx.223595.1.S1_s_at	pmrna41658	cytochrome P450 /// cytochrome P450	-	1e+0	At2g28400	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.93	PtpAffx.39069.1.S1_at	CK097783	hypothetical protein	-	1e+0	At4g00850	GIF3 (GRF1-INTERACTING FACTOR 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.93	Ptp.6523.1.S1_at	BI131733	hypothetical protein	-	3e-1	At4g34790	auxin-responsive family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.94	PtpAffx.201250.1.S1_s_at	pmrna2478	hypothetical protein	-	1e-1	At4g32330	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	0.93	PtpAffx.224735.1.S1_s_at	pmrna43551	hypothetical protein	-	2e-7	At3g45860	receptor-like protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.94	PtpAffx.58827.1.S1_at	CK089146	multidrug/pheromone exporter, MDR family, ABC transporter family	-	5e-7	At2g36910	ABCB1 (ATP BINDING CASSETTE SUBFAMILY B1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.4	97.0	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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