Co-expression analysis

Gene ID PtpAffx.54313.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g44390: FAD-binding domain-containing protein (HF=2e-9)
Module size 6 genes
NF 0.12
%ile 24.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.91PtpAffx.54313.1.S1_atAI166744hypothetical protein-2e-9At5g44390FAD-binding domain-containing proteinO.I.H.G.S.X.
0.4369.70.92PtpAffx.85797.1.S1_s_atBU812872hypothetical protein-3e-1At1g01540protein kinase family proteinO.I.H.G.S.X.
0.1626.90.90PtpAffx.54313.2.S1_a_atBU895504--6e-4At2g34790MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)O.I.H.G.S.X.
0.1118.10.93Ptp.2927.2.S1_atDN499742tubulin gamma complex-associated protein /// tubulin gamma complex-associated protein-5e-47At5g06680SPC98 (SPINDLE POLE BODY COMPONENT 98)O.I.H.G.S.X.
0.0812.90.94PtpAffx.136498.1.S1_atCF230021hypothetical protein-6e-3At1g52260ATPDIL1-5 (PDI-LIKE 1-5)O.I.H.G.S.X.
0.046.90.91PtpAffx.205886.1.S1_atpmrna11667hypothetical protein-7e-1At2g42880ATMPK20O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.894.9GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.894.9GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.293.5GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.992.5GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1616137_at, orthologous to the query gene, PtpAffx.54313.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9799.91616137_atAt5g44390hypothetical protein LOC100241403-2e-1At4g24250MLO13 (MILDEW RESISTANCE LOCUS O 13)O.I.H.G.S.X.
0.7088.61613980_atAt5g44390hypothetical protein LOC100264662-2e-6At2g05920subtilase family proteinO.I.H.G.S.X.
0.6384.31620766_atAt5g44390hypothetical protein LOC100249220-9e-18At1g23000heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.5980.61618871_atAt5g44390hypothetical protein LOC100265907-3e-7At4g38660thaumatin, putativeO.I.H.G.S.X.
0.5679.41607767_atAt5g44390hypothetical protein LOC100252749-4e-1At3g57640protein kinase family proteinO.I.H.G.S.X.
0.5475.71607495_atAt5g44390hypothetical protein LOC100264093-3e-17At4g34160CYCD3O.I.H.G.S.X.
0.5375.21617440_atAt5g44390hypothetical protein LOC100247017-8e-2At5g61470zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.5375.21610683_atAt5g44390hypothetical protein LOC100264093-2e-6At5g67260CYCD3O.I.H.G.S.X.
0.5273.91611074_atAt5g44390hypothetical protein LOC100247256-2e-6At2g33510protein bindingO.I.H.G.S.X.
0.4868.81608191_atAt5g44390hypothetical protein LOC100245911-4e-20At2g39700ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)O.I.H.G.S.X.
0.4868.81613528_atAt5g44390--1e-6At5g66920sks17 (SKU5 Similar 17)O.I.H.G.S.X.
0.4868.81619847_atAt5g44390hypothetical protein LOC100261336-1e+0At3g22780TSO1 (CHINESE FOR 'UGLY')O.I.H.G.S.X.
0.4767.71621574_atAt5g44390hypothetical protein LOC100241803-3e-2At5g28290ATNEK3 (NIMA-RELATED KINASE3)O.I.H.G.S.X.
0.4564.61615968_atAt5g44390hypothetical protein LOC100263560-4e-4At2g31270CDT1A (ARABIDOPSIS HOMOLOG OF YEAST CDT1 A)O.I.H.G.S.X.
0.4361.51616016_atAt5g44390hypothetical protein LOC100265943-4e-1At2g27750nucleolar matrix protein-relatedO.I.H.G.S.X.
0.4260.11611378_atAt5g44390hypothetical protein LOC100244478-2e-8At1g60630leucine-rich repeat family proteinO.I.H.G.S.X.
0.4158.71616522_atAt5g44390hypothetical protein LOC100262892-2e-8At3g14310ATPME3O.I.H.G.S.X.
0.3954.91606471_atAt5g44390hypothetical protein LOC100244589-3e-6At5g07030aspartic-type endopeptidaseO.I.H.G.S.X.
0.3853.61608161_atAt5g44390--1e+1At5g63400ADK1 (ADENYLATE KINASE 1)O.I.H.G.S.X.
0.3446.81608474_atAt5g44390hypothetical protein LOC100261256-1e-3At1g09840ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)O.I.H.G.S.X.
0.3345.71611168_atAt5g44390hypothetical protein LOC100247366-2e-139At1g50010TUA2O.I.H.G.S.X.
0.3345.71616864_x_atAt5g44390--1e+1At5g63400ADK1 (ADENYLATE KINASE 1)O.I.H.G.S.X.
0.3345.71611516_atAt5g44390hypothetical protein LOC100262734-2e-5At3g28690protein kinase, putativeO.I.H.G.S.X.
0.3243.11622084_atAt5g44390hypothetical protein LOC100256435-1e+0At5g51451unknown proteinO.I.H.G.S.X.
0.3243.11618251_atAt5g44390--6e-9At3g5343060S ribosomal protein L12 (RPL12B)O.I.H.G.S.X.
0.3243.11615295_atAt5g44390hypothetical protein LOC100259092-4e-1At4g08190Ras-related GTP-binding protein, putativeO.I.H.G.S.X.
0.3141.31607678_atAt5g44390hypothetical protein LOC100254822-3e-25At2g34710PHB (PHABULOSA)O.I.H.G.S.X.
0.3141.31612089_atAt5g44390--2e+0At5g12235CLE22 (CLAVATA3/ESR-RELATED 22)O.I.H.G.S.X.
0.2937.71620972_atAt5g44390hypothetical protein LOC100244635-3e-10At2g34190xanthine/uracil permease family proteinO.I.H.G.S.X.
0.2632.01615797_atAt5g44390hypothetical protein LOC100256435-9e-27At5g41310kinesin motor protein-relatedO.I.H.G.S.X.
0.2632.01616611_atAt5g44390--2e-1At2g33220-O.I.H.G.S.X.
0.1718.21614917_atAt5g44390hypothetical protein LOC100267340-4e+0At5g60660PIP2O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays



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