Co-expression analysis

Gene ID PtpAffx.54313.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g44390: FAD-binding domain-containing protein (HF=2e-9)
Module size 6 genes
NF 0.12
%ile 24.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.91PtpAffx.54313.1.S1_atAI166744hypothetical protein-2e-9At5g44390FAD-binding domain-containing proteinO.I.H.G.S.X.
0.4369.70.92PtpAffx.85797.1.S1_s_atBU812872hypothetical protein-3e-1At1g01540protein kinase family proteinO.I.H.G.S.X.
0.1626.90.90PtpAffx.54313.2.S1_a_atBU895504--6e-4At2g34790MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)O.I.H.G.S.X.
0.1118.10.93Ptp.2927.2.S1_atDN499742tubulin gamma complex-associated protein /// tubulin gamma complex-associated protein-5e-47At5g06680SPC98 (SPINDLE POLE BODY COMPONENT 98)O.I.H.G.S.X.
0.0812.90.94PtpAffx.136498.1.S1_atCF230021hypothetical protein-6e-3At1g52260ATPDIL1-5 (PDI-LIKE 1-5)O.I.H.G.S.X.
0.046.90.91PtpAffx.205886.1.S1_atpmrna11667hypothetical protein-7e-1At2g42880ATMPK20O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.894.9GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.894.9GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.293.5GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.992.5GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, HVSMEm0017K24r2_at, orthologous to the query gene, PtpAffx.54313.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7086.0HVSMEm0017K24r2_atAt5g44390--1e+0At1g08340rac GTPase activating protein, putativeO.I.H.G.S.X.
0.2835.5Contig14887_atAt5g44390--2e-2At4g08180ORP1C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1C)O.I.H.G.S.X.
0.2122.6Contig19391_atAt5g44390--9e-3At3g01260aldose 1-epimerase/ carbohydrate binding / catalytic/ isomeraseO.I.H.G.S.X.
0.1919.6Contig10490_s_atAt5g44390--2e-2At5g19930integral membrane family proteinO.I.H.G.S.X.
0.1919.6Contig8702_atAt5g44390--5e-5At3g56660BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49)O.I.H.G.S.X.
0.1514.1HS05B02u_atAt5g44390--3e-10At4g14240-O.I.H.G.S.X.
0.119.4HV14M24u_s_atAt5g44390--3e+0At1g03250unknown proteinO.I.H.G.S.X.
0.108.4S0001000015E02F1_atAt5g44390--1e+1At3g0670060S ribosomal protein L29 (RPL29A)O.I.H.G.S.X.
0.097.4Contig9536_atAt5g44390--6e-38At1g09140SF2/ASF-like splicing modulator (SRP30)O.I.H.G.S.X.
0.097.4Contig10491_atAt5g44390--2e+0Atmg01100-O.I.H.G.S.X.
0.064.8Contig25800_atAt5g44390--1e-9At3g22260OTU-like cysteine protease family proteinO.I.H.G.S.X.
0.054.1Contig20199_atAt5g44390--4e+0At3g16670unknown proteinO.I.H.G.S.X.
0.054.1HI11M05r_s_atAt5g44390--5e-2At3g50520phosphoglycerate/bisphosphoglycerate mutase family proteinO.I.H.G.S.X.
0.043.4HVSMEf0011J01r2_s_atAt5g44390--6e-2At4g38920ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)O.I.H.G.S.X.
0.032.6HVSMEa0011M07f2_x_atAt5g44390--5e-7At4g05050UBQ11 (UBIQUITIN 11)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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