Co-expression analysis

Gene ID	PtpAffx.54313.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g44390: FAD-binding domain-containing protein (HF=2e-9)
Module size	6 genes
NF	0.12
%ile	24.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.91	PtpAffx.54313.1.S1_at	AI166744	hypothetical protein	-	2e-9	At5g44390	FAD-binding domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.92	PtpAffx.85797.1.S1_s_at	BU812872	hypothetical protein	-	3e-1	At1g01540	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.90	PtpAffx.54313.2.S1_a_at	BU895504	-	-	6e-4	At2g34790	MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.93	Ptp.2927.2.S1_at	DN499742	tubulin gamma complex-associated protein /// tubulin gamma complex-associated protein	-	5e-47	At5g06680	SPC98 (SPINDLE POLE BODY COMPONENT 98)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.94	PtpAffx.136498.1.S1_at	CF230021	hypothetical protein	-	6e-3	At1g52260	ATPDIL1-5 (PDI-LIKE 1-5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.91	PtpAffx.205886.1.S1_at	pmrna11667	hypothetical protein	-	7e-1	At2g42880	ATMPK20	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.8	94.9	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the barley gene, HVSMEm0017K24r2_at, orthologous to the query gene, PtpAffx.54313.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	86.0	HVSMEm0017K24r2_at	At5g44390	-	-	1e+0	At1g08340	rac GTPase activating protein, putative	O.I.	H.G.	S.X.	Please select
0.28	35.5	Contig14887_at	At5g44390	-	-	2e-2	At4g08180	ORP1C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1C)	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig19391_at	At5g44390	-	-	9e-3	At3g01260	aldose 1-epimerase/ carbohydrate binding / catalytic/ isomerase	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig10490_s_at	At5g44390	-	-	2e-2	At5g19930	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig8702_at	At5g44390	-	-	5e-5	At3g56660	BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49)	O.I.	H.G.	S.X.	Please select
0.15	14.1	HS05B02u_at	At5g44390	-	-	3e-10	At4g14240	-	O.I.	H.G.	S.X.	Please select
0.11	9.4	HV14M24u_s_at	At5g44390	-	-	3e+0	At1g03250	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	S0001000015E02F1_at	At5g44390	-	-	1e+1	At3g06700	60S ribosomal protein L29 (RPL29A)	O.I.	H.G.	S.X.	Please select
0.09	7.4	Contig9536_at	At5g44390	-	-	6e-38	At1g09140	SF2/ASF-like splicing modulator (SRP30)	O.I.	H.G.	S.X.	Please select
0.09	7.4	Contig10491_at	At5g44390	-	-	2e+0	Atmg01100	-	O.I.	H.G.	S.X.	Please select
0.06	4.8	Contig25800_at	At5g44390	-	-	1e-9	At3g22260	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please select
0.05	4.1	Contig20199_at	At5g44390	-	-	4e+0	At3g16670	unknown protein	O.I.	H.G.	S.X.	Please select
0.05	4.1	HI11M05r_s_at	At5g44390	-	-	5e-2	At3g50520	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.	S.X.	Please select
0.04	3.4	HVSMEf0011J01r2_s_at	At5g44390	-	-	6e-2	At4g38920	ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)	O.I.	H.G.	S.X.	Please select
0.03	2.6	HVSMEa0011M07f2_x_at	At5g44390	-	-	5e-7	At4g05050	UBQ11 (UBIQUITIN 11)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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