CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.54313.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g44390: FAD-binding domain-containing protein (HF=2e-9)

Module size 6 genes

NF 0.12

%ile 24.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 0.91 PtpAffx.54313.1.S1_at AI166744 hypothetical protein - 2e-9 At5g44390 FAD-binding domain-containing protein O.I. H.G. S.X.
0.43 69.7 0.92 PtpAffx.85797.1.S1_s_at BU812872 hypothetical protein - 3e-1 At1g01540 protein kinase family protein O.I. H.G. S.X.
0.16 26.9 0.90 PtpAffx.54313.2.S1_a_at BU895504 - - 6e-4 At2g34790 MEE23 (MATERNAL EFFECT EMBRYO ARREST 23) O.I. H.G. S.X.
0.11 18.1 0.93 Ptp.2927.2.S1_at DN499742 tubulin gamma complex-associated protein /// tubulin gamma complex-associated protein - 5e-47 At5g06680 SPC98 (SPINDLE POLE BODY COMPONENT 98) O.I. H.G. S.X.
0.08 12.9 0.94 PtpAffx.136498.1.S1_at CF230021 hypothetical protein - 6e-3 At1g52260 ATPDIL1-5 (PDI-LIKE 1-5) O.I. H.G. S.X.
0.04 6.9 0.91 PtpAffx.205886.1.S1_at pmrna11667 hypothetical protein - 7e-1 At2g42880 ATMPK20 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.8 94.9 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g44390, orthologous to the query gene, PtpAffx.54313.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.24 20.7 At5g44390 834465 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFOPMA O.I. H.G. S.X.
0.30 32.1 At4g23280 828427 protein kinase, putative F:kinase activity;P:defense response;C:chloroplast;MPOBFVA O.I. H.G. S.X.
0.29 30.3 At1g61380 842432 SD1-29 (S-DOMAIN-1 29) F:carbohydrate binding, protein kinase activity, kinase activity;P:protein amino acid autophosphorylation;C:endomembrane system;MPOBFVA O.I. H.G. S.X.
0.14 6.8 At1g51800 841606 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. H.G. S.X.
0.04 0.9 At1g74360 843777 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:mitochondrion;MPOBFVA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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