Co-expression analysis

Gene ID PtpAffx.54313.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g44390: FAD-binding domain-containing protein (HF=2e-9)
Module size 6 genes
NF 0.12
%ile 24.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.91PtpAffx.54313.1.S1_atAI166744hypothetical protein-2e-9At5g44390FAD-binding domain-containing proteinO.I.H.G.S.X.
0.4369.70.92PtpAffx.85797.1.S1_s_atBU812872hypothetical protein-3e-1At1g01540protein kinase family proteinO.I.H.G.S.X.
0.1626.90.90PtpAffx.54313.2.S1_a_atBU895504--6e-4At2g34790MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)O.I.H.G.S.X.
0.1118.10.93Ptp.2927.2.S1_atDN499742tubulin gamma complex-associated protein /// tubulin gamma complex-associated protein-5e-47At5g06680SPC98 (SPINDLE POLE BODY COMPONENT 98)O.I.H.G.S.X.
0.0812.90.94PtpAffx.136498.1.S1_atCF230021hypothetical protein-6e-3At1g52260ATPDIL1-5 (PDI-LIKE 1-5)O.I.H.G.S.X.
0.046.90.91PtpAffx.205886.1.S1_atpmrna11667hypothetical protein-7e-1At2g42880ATMPK20O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.894.9GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.894.9GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.293.5GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.992.5GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage