Co-expression analysis

Gene ID PtpAffx.5430.3.S1_a_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g19910: AVA-P2 (HF=1e-112)
Module size 6 genes
NF 0.40
%ile 68.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.95PtpAffx.5430.3.S1_a_atCV242643hypothetical protein-1e-112At1g19910AVA-P2O.I.H.G.S.X.
0.5078.60.95PtpAffx.6381.1.S1_atCV265918integral membrane single C2 domain protein /// integral membrane single C2 domain protein-6e-10At3g61050NTMC2T4O.I.H.G.S.X.
0.5078.60.95Ptp.2592.2.S1_x_atCX185841thioredoxin h-8e-6At1g45145ATTRX5O.I.H.G.S.X.
0.4471.90.95PtpAffx.48549.1.A1_atCK096134hypothetical protein-2e-17At2g16800high-affinity nickel-transport family proteinO.I.H.G.S.X.
0.2340.50.95PtpAffx.34296.2.S1_atCV256170hypothetical protein-8e-6At3g28140calmodulin-binding proteinO.I.H.G.S.X.
0.1423.50.95Ptp.514.1.A1_s_atCV258507hypothetical protein-2e-18At2g20360binding / catalytic/ coenzyme bindingO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.590.9GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.490.4GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.389.8GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.886.4GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.886.4GSM372100Clone3200_LPI5_N+_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.785.5GSM372094Clone3200_LPI5_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.785.5GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.785.5GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM328077Populus x canescens leaf control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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