Co-expression analysis

Gene ID	PtpAffx.54256.2.A1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g24240: WRKY7 (HF=8e-33)
Module size	6 genes
NF	0.16
%ile	31.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	0.93	PtpAffx.54256.2.A1_s_at	CV229094	hypothetical protein	-	8e-33	At4g24240	WRKY7	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.93	PtpAffx.88716.1.A1_at	CV255605	-	-	4e+0	At5g50345	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	PtpAffx.204410.1.S1_s_at	pmrna8664	hypothetical protein	-	7e-60	At2g27350	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.95	Ptp.7378.1.S1_at	DN495292	hypothetical protein	-	5e-19	At2g47070	SPL1 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.93	PtpAffx.677.1.A1_a_at	CV275836	hypothetical protein	-	7e-35	At1g79650	RAD23	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.93	Ptp.598.1.A1_at	CV281520	hypothetical protein	-	4e-1	At3g16680	DNA binding / DNA-directed RNA polymerase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.4	99.0	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
7.4	98.2	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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