CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.5423.1.S1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At4g11820: MVA1 (HF=3e-24)

Module size 6 genes

NF 0.60

%ile 90.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.94 PtpAffx.5423.1.S1_s_at CV229504 hypothetical protein - 3e-24 At4g11820 MVA1 O.I. H.G. S.X.
0.83 97.0 0.94 Ptp.4515.1.S1_at CV253179 hypothetical protein - 5e-79 At5g47770 FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) O.I. H.G. S.X.
0.67 91.1 0.94 Ptp.4515.1.S1_s_at CV253179 hypothetical protein - 5e-79 At5g47770 FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) O.I. H.G. S.X.
0.59 84.9 0.94 PtpAffx.153434.1.A1_s_at CV264552 hypothetical protein - 2e-37 At5g47720 acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative O.I. H.G. S.X.
0.50 78.6 0.96 PtpAffx.147936.1.S1_s_at BP924717 hypothetical protein - 1e-21 At5g48230 ACAT2 (ACETOACETYL-COA THIOLASE 2) O.I. H.G. S.X.
0.24 41.8 0.94 Ptp.6668.1.S1_at CN523821 hypothetical protein - 4e-38 At5g48230 ACAT2 (ACETOACETYL-COA THIOLASE 2) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	99.2	0.94	PtpAffx.5423.1.S1_s_at	CV229504	hypothetical protein	-	3e-24	At4g11820	MVA1	O.I.	H.G.	S.X.
0.83	97.0	0.94	Ptp.4515.1.S1_at	CV253179	hypothetical protein	-	5e-79	At5g47770	FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1)	O.I.	H.G.	S.X.
0.67	91.1	0.94	Ptp.4515.1.S1_s_at	CV253179	hypothetical protein	-	5e-79	At5g47770	FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1)	O.I.	H.G.	S.X.
0.59	84.9	0.94	PtpAffx.153434.1.A1_s_at	CV264552	hypothetical protein	-	2e-37	At5g47720	acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative	O.I.	H.G.	S.X.
0.50	78.6	0.96	PtpAffx.147936.1.S1_s_at	BP924717	hypothetical protein	-	1e-21	At5g48230	ACAT2 (ACETOACETYL-COA THIOLASE 2)	O.I.	H.G.	S.X.
0.24	41.8	0.94	Ptp.6668.1.S1_at	CN523821	hypothetical protein	-	4e-38	At5g48230	ACAT2 (ACETOACETYL-COA THIOLASE 2)	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.50	78.6	0.90	PtpAffx.67455.1.S1_at	BU874579	hypothetical protein	-	7e-9	At1g09970	LRR XI-23	O.I.	H.G.	S.X.
0.50	78.6	0.92	PtpAffx.5423.3.S1_at	CV242532	hypothetical protein	-	2e-103	At4g11820	MVA1	O.I.	H.G.	S.X.
0.50	78.6	0.92	PtpAffx.214348.1.S1_at	pmrna27904	hypothetical protein	-	5e-1	At3g53530	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.
0.50	78.6	0.94	PtpAffx.216799.1.S1_at	pmrna31818	hypothetical protein	-	2e+0	At4g21902	unknown protein	O.I.	H.G.	S.X.
0.50	78.6	0.95	PtpAffx.9177.1.S1_at	CK105027	-	-	3e-1	At4g08260	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.
0.47	74.6	0.89	PtpAffx.7400.1.S1_at	CF235408	hypothetical protein	-	1e+0	At1g18600	RBL12 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 12)	O.I.	H.G.	S.X.
0.40	67.0	0.93	PtpAffx.2386.4.S1_at	DN493387	hypothetical protein	-	2e+0	At3g60370	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	O.I.	H.G.	S.X.
0.40	67.0	0.95	PtpAffx.212675.1.S1_s_at	pmrna24792	hypothetical protein	-	2e-2	At4g31000	calmodulin-binding protein	O.I.	H.G.	S.X.
0.36	61.6	0.91	PtpAffx.207259.1.S1_at	pmrna14401	hypothetical protein	-	2e-2	At2g23360	transport protein-related	O.I.	H.G.	S.X.
0.36	61.6	0.93	PtpAffx.217844.1.S1_s_at	pmrna33267	hypothetical protein	-	4e-1	At4g26555	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	O.I.	H.G.	S.X.
0.36	61.6	0.93	PtpAffx.212675.1.S1_at	pmrna24792	hypothetical protein	-	2e-2	At4g31000	calmodulin-binding protein	O.I.	H.G.	S.X.
0.36	61.6	0.95	PtpAffx.152513.1.S1_at	AJ774588	hypothetical protein	-	4e-10	At3g54020	phosphatidic acid phosphatase-related / PAP2-related	O.I.	H.G.	S.X.
0.36	61.6	0.95	PtpAffx.83148.2.S1_s_at	CX182910	hypothetical protein	-	5e-74	At5g49460	ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2)	O.I.	H.G.	S.X.
0.35	59.7	0.94	PtpAffx.208122.1.S1_at	pmrna16132	hypothetical protein	-	2e+0	At1g22510	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.33	57.5	0.88	PtpAffx.221864.1.S1_at	pmrna38957	hypothetical protein	-	1e+0	At2g33110	ATVAMP723 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 723)	O.I.	H.G.	S.X.
0.33	57.5	0.91	PtpAffx.158527.1.S1_at	CA825767	hypothetical protein	-	6e+0	At4g18501	unknown protein	O.I.	H.G.	S.X.
0.33	57.5	0.92	PtpAffx.212299.1.S1_at	pmrna24119	cytochrome P450	-	3e+0	At4g13965	-	O.I.	H.G.	S.X.
0.33	57.5	0.92	PtpAffx.22865.1.S1_at	DN484594	hypothetical protein	-	3e-5	At3g09020	alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein	O.I.	H.G.	S.X.
0.33	57.5	0.92	PtpAffx.89823.2.A1_a_at	DN487789	ABC transporter family, pleiotropic drug resistance protein	-	2e-11	At1g15210	PDR7 (PLEIOTROPIC DRUG RESISTANCE 7)	O.I.	H.G.	S.X.
0.33	57.5	0.93	PtpAffx.162546.1.A1_at	CV272261	hypothetical protein	-	1e-3	At5g52600	AtMYB82 (myb domain protein 82)	O.I.	H.G.	S.X.
0.33	57.5	0.95	PtpAffx.211742.1.S1_at	pmrna23011	hypothetical protein	-	2e-4	At4g16120	COBL7 (COBRA-LIKE 7)	O.I.	H.G.	S.X.
0.31	53.7	0.93	PtpAffx.83148.1.S1_s_at	BU831402	hypothetical protein	-	0	At5g49460	ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2)	O.I.	H.G.	S.X.
0.31	53.7	0.93	PtpAffx.212083.1.S1_at	pmrna23708	hypothetical protein	-	9e-1	At5g14930	SAG101 (SENESCENCE-ASSOCIATED GENE 101)	O.I.	H.G.	S.X.
0.31	53.7	0.94	Ptp.4670.1.S1_s_at	CN523863	hypothetical protein	-	6e-115	At5g49460	ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2)	O.I.	H.G.	S.X.
0.30	52.0	0.92	PtpAffx.49041.3.A1_at	BP931742	-	-	4e-6	At4g19080	unknown protein	O.I.	H.G.	S.X.
0.30	52.0	0.83	PtpAffx.17770.3.A1_at	CV273582	-	-	3e+0	At5g13430	ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative	O.I.	H.G.	S.X.
0.29	50.5	0.86	PtpAffx.222723.1.S1_at	pmrna40322	hypothetical protein	-	1e-4	At2g38050	DET2 (DE-ETIOLATED 2)	O.I.	H.G.	S.X.
0.29	50.5	0.93	PtpAffx.130982.1.S1_s_at	CN520215	hypothetical protein	-	8e-37	At5g54800	GPT1	O.I.	H.G.	S.X.
0.29	50.5	0.95	PtpAffx.218018.1.S1_s_at	pmrna33518	flavonoid o-methyltransferase related /// flavonoid o-methyltransferase related	-	6e-4	At3g16780	60S ribosomal protein L19 (RPL19B)	O.I.	H.G.	S.X.
0.25	43.6	0.93	PtpAffx.57544.1.A1_at	CV266909	-	-	3e-1	At3g07920	translation initiation factor	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.0 98.7 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.7 97.9 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.0 92.9 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7 85.5 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6 84.5 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6 84.5 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.6 84.5 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
9.0	98.7	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.7	97.9	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.0	92.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6	84.5	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6	84.5	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	PtpAffx.5423.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g11820: MVA1 (HF=3e-24)
Module size	6 genes
NF	0.60
%ile	90.5

Co-expression analysis

Gene ID PtpAffx.5423.1.S1_s_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At4g11820: MVA1 (HF=3e-24) Module size 6 genes NF 0.60 %ile 90.5

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.5423.1.S1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At4g11820: MVA1 (HF=3e-24)

Module size 6 genes

NF 0.60

%ile 90.5

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays