Co-expression analysis

Gene ID	PtpAffx.5423.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g11820: MVA1 (HF=3e-24)
Module size	6 genes
NF	0.60
%ile	90.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.94	PtpAffx.5423.1.S1_s_at	CV229504	hypothetical protein	-	3e-24	At4g11820	MVA1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.83	97.0	0.94	Ptp.4515.1.S1_at	CV253179	hypothetical protein	-	5e-79	At5g47770	FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.94	Ptp.4515.1.S1_s_at	CV253179	hypothetical protein	-	5e-79	At5g47770	FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	0.94	PtpAffx.153434.1.A1_s_at	CV264552	hypothetical protein	-	2e-37	At5g47720	acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	PtpAffx.147936.1.S1_s_at	BP924717	hypothetical protein	-	1e-21	At5g48230	ACAT2 (ACETOACETYL-COA THIOLASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.94	Ptp.6668.1.S1_at	CN523821	hypothetical protein	-	4e-38	At5g48230	ACAT2 (ACETOACETYL-COA THIOLASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.0	98.7	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.7	97.9	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.0	92.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6	84.5	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6	84.5	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

A co-expression module including the maize gene, Zm.17569.1.S1_at, orthologous to the query gene, PtpAffx.5423.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.2	Zm.17569.1.S1_at	At4g11820	hydroxymethylglutaryl-CoA synthase	-	8e-16	At4g11820	MVA1	O.I.	H.G.	S.X.	Please select
0.65	82.1	Zm.4728.1.A1_at	At4g11820	-	-	2e+0	At4g10850	nodulin MtN3 family protein	O.I.	H.G.	S.X.	Please select
0.58	75.1	Zm.12326.1.S1_at	At4g11820	hypothetical protein LOC100278585	-	8e-2	At3g56910	PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.54	69.8	Zm.5305.1.A1_at	At4g11820	ribonucleoprotein A	-	6e-4	At2g37220	29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative	O.I.	H.G.	S.X.	Please select
0.53	69.1	Zm.7598.1.A1_at	At4g11820	-	-	3e-3	At2g40510	40S ribosomal protein S26 (RPS26A)	O.I.	H.G.	S.X.	Please select
0.51	66.4	Zm.18267.1.A1_at	At4g11820	-	-	2e+0	At5g59845	gibberellin-regulated family protein	O.I.	H.G.	S.X.	Please select
0.49	61.9	Zm.13351.2.A1_at	At4g11820	Protein kinase	-	2e-13	At5g55910	D6PK (D6 PROTEIN KINASE)	O.I.	H.G.	S.X.	Please select
0.48	61.3	Zm.3303.2.A1_at	At4g11820	lipoxygenase	-	3e+0	At3g22400	LOX5	O.I.	H.G.	S.X.	Please select
0.45	56.4	Zm.7010.3.S1_at	At4g11820	-	-	5e-2	At2g32100	OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16)	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.796.1.A1_a_at	At4g11820	-	-	3e-9	At5g53140	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.5570.1.A1_at	At4g11820	hypothetical protein LOC100191759	-	2e-4	At4g24890	PAP24 (PURPLE ACID PHOSPHATASE 24)	O.I.	H.G.	S.X.	Please select
0.42	51.3	Zm.2591.1.A1_at	At4g11820	autophagy-related 8c	-	4e-51	At1g62040	ATG8C (autophagy 8c)	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.5106.1.A1_at	At4g11820	hypothetical protein LOC100273412	-	1e-20	At4g22330	ATCES1	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.6096.1.A1_at	At4g11820	hypothetical protein LOC100273833	-	6e-1	At4g39170	SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative	O.I.	H.G.	S.X.	Please select
0.38	44.2	Zm.1011.1.S1_at	At4g11820	hypothetical protein LOC100192700	-	3e+0	At1g35242	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	Zm.155.2.S1_at	At4g11820	-	-	4e-3	At4g32400	SHS1 (SODIUM HYPERSENSITIVE 1)	O.I.	H.G.	S.X.	Please select
0.37	42.3	Zm.768.1.A1_at	At4g11820	-	-	3e+0	At2g27750	nucleolar matrix protein-related	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.3169.2.S1_at	At4g11820	hypothetical protein LOC100279753	-	4e-53	At5g44635	minichromosome maintenance family protein / MCM family protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	ZmAffx.227.1.S1_at	At4g11820	-	-	3e+0	At5g50410	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.5799.1.A1_at	At4g11820	gamma-tocopherol methyltransferase	-	8e-13	At1g64970	G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.384.1.A1_at	At4g11820	physical impedance induced protein2	-	6e+0	At5g03100	F-box family protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.3353.1.A1_at	At4g11820	toc64	-	4e-1	At3g09120	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.5517.1.A1_at	At4g11820	hypothetical protein LOC100273563	-	2e-1	At1g15740	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.6946.2.A1_at	At4g11820	Hypothetical protein LOC100191975	-	3e-6	At1g11680	CYP51G1 (CYTOCHROME P450 51G1)	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.18033.1.A1_at	At4g11820	-	-	1e+0	At1g11240	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.6558.1.S1_at	At4g11820	eukaryotic initiation factor3	-	1e-10	At4g11420	EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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