Co-expression analysis

Gene ID	PtpAffx.5423.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g11820: MVA1 (HF=3e-24)
Module size	6 genes
NF	0.60
%ile	90.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.94	PtpAffx.5423.1.S1_s_at	CV229504	hypothetical protein	-	3e-24	At4g11820	MVA1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.83	97.0	0.94	Ptp.4515.1.S1_at	CV253179	hypothetical protein	-	5e-79	At5g47770	FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.94	Ptp.4515.1.S1_s_at	CV253179	hypothetical protein	-	5e-79	At5g47770	FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	0.94	PtpAffx.153434.1.A1_s_at	CV264552	hypothetical protein	-	2e-37	At5g47720	acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	PtpAffx.147936.1.S1_s_at	BP924717	hypothetical protein	-	1e-21	At5g48230	ACAT2 (ACETOACETYL-COA THIOLASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.94	Ptp.6668.1.S1_at	CN523821	hypothetical protein	-	4e-38	At5g48230	ACAT2 (ACETOACETYL-COA THIOLASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.0	98.7	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.7	97.9	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.0	92.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6	84.5	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6	84.5	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

A co-expression module including the barley gene, Contig9135_at, orthologous to the query gene, PtpAffx.5423.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.79	91.4	Contig9135_at	At4g11820	-	-	1e-42	At4g11820	MVA1	O.I.	H.G.	S.X.	Please select
0.62	79.1	Contig11024_at	At4g11820	-	-	3e-10	At1g32550	ferredoxin family protein	O.I.	H.G.	S.X.	Please select
0.58	74.9	rbaal20i06_s_at	At4g11820	-	-	8e-3	At1g17650	GLYR2 (GLYOXYLATE REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.53	69.7	Contig2925_at	At4g11820	-	-	1e-28	At5g55160	SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2)	O.I.	H.G.	S.X.	Please select
0.53	69.7	HV06P21u_at	At4g11820	-	-	2e+0	At3g06019	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig13178_at	At4g11820	-	-	6e-17	At5g50020	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	Contig6420_at	At4g11820	-	-	5e-5	At3g61140	FUS6 (FUSCA 6)	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig7680_at	At4g11820	-	-	3e+0	At5g10260	AtRABH1e (Arabidopsis Rab GTPase homolog H1e)	O.I.	H.G.	S.X.	Please select
0.42	55.2	Contig5050_s_at	At4g11820	-	-	8e-2	At1g26920	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig11633_at	At4g11820	-	-	6e-1	At3g53650	histone H2B, putative	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig9113_at	At4g11820	-	-	2e-26	At5g11980	conserved oligomeric Golgi complex component-related / COG complex component-related	O.I.	H.G.	S.X.	Please select
0.39	50.5	Contig9532_at	At4g11820	-	-	2e+0	At5g23100	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	Contig8542_at	At4g11820	-	-	9e-1	At1g22980	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig6459_at	At4g11820	-	-	1e+0	At5g03995	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig23795_at	At4g11820	-	-	1e+1	At5g49220	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	Contig7625_at	At4g11820	-	-	4e-1	At5g36659	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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