CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.5423.1.S1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At4g11820: MVA1 (HF=3e-24)

Module size 6 genes

NF 0.60

%ile 90.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.94 PtpAffx.5423.1.S1_s_at CV229504 hypothetical protein - 3e-24 At4g11820 MVA1 O.I. H.G. S.X.
0.83 97.0 0.94 Ptp.4515.1.S1_at CV253179 hypothetical protein - 5e-79 At5g47770 FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) O.I. H.G. S.X.
0.67 91.1 0.94 Ptp.4515.1.S1_s_at CV253179 hypothetical protein - 5e-79 At5g47770 FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) O.I. H.G. S.X.
0.59 84.9 0.94 PtpAffx.153434.1.A1_s_at CV264552 hypothetical protein - 2e-37 At5g47720 acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative O.I. H.G. S.X.
0.50 78.6 0.96 PtpAffx.147936.1.S1_s_at BP924717 hypothetical protein - 1e-21 At5g48230 ACAT2 (ACETOACETYL-COA THIOLASE 2) O.I. H.G. S.X.
0.24 41.8 0.94 Ptp.6668.1.S1_at CN523821 hypothetical protein - 4e-38 At5g48230 ACAT2 (ACETOACETYL-COA THIOLASE 2) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.0 98.7 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.7 97.9 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.0 92.9 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7 85.5 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6 84.5 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6 84.5 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.6 84.5 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g11820, orthologous to the query gene, PtpAffx.5423.1.S1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.55 70.6 At4g11820 826788 MVA1 Encodes a protein with hydroxymethylglutaryl-CoA synthase activity which was characterized by phenotypical complementation of the S. cerevisiae mutant. O.I. H.G. S.X.
0.75 86.9 At5g47770 834828 FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) Encodes a protein with farnesyl diphosphate synthase activity. O.I. H.G. S.X.
0.75 86.9 At5g48230 834876 ACAT2 (ACETOACETYL-COA THIOLASE 2) F:acetyl-CoA C-acetyltransferase activity, catalytic activity;P:embryonic development ending in seed dormancy;C:peroxisome, plasma membrane;BOMFAP O.I. H.G. S.X.
0.67 81.6 At5g27450 832804 MK (MEVALONATE KINASE) Encodes a protein with mevalonate kinase activity involved in the mevalonate pathway. O.I. H.G. S.X.
0.27 26.2 At2g34560 818020 katanin, putative F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:protein metabolic process;C:unknown;OBMFPAV O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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