Co-expression analysis

Gene ID	PtpAffx.53711.3.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g31660: - (HF=3e-14)
Module size	6 genes
NF	0.02
%ile	4.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	84.2	0.79	PtpAffx.53711.3.S1_at	DN500662	hypothetical protein	-	3e-14	At1g31660	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.83	PtpAffx.214181.1.S1_at	pmrna27580	hypothetical protein	-	4e-1	At3g30720	QQS (QUA-QUINE STARCH)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.83	PtpAffx.211593.1.S1_at	pmrna22716	hypothetical protein	-	5e-1	At1g73030	VPS46.2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.81	PtpAffx.218254.1.S1_x_at	pmrna33806	hypothetical protein	-	3e+0	At4g33310	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.81	PtpAffx.203152.1.S1_at	pmrna6242	hypothetical protein	-	3e+0	At3g04184	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.79	PtpAffx.44238.1.A1_at	CV239917	-	-	5e+0	At4g08940	ubiquitin thiolesterase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.4	99.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.6	97.2	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.0	96.6	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.2	95.6	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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