Co-expression analysis

Gene ID	PtpAffx.5315.1.A1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g09800: RPS18C (S18 RIBOSOMAL PROTEIN) (HF=1e-90)
Module size	6 genes
NF	0.45
%ile	74.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	94.9	0.97	PtpAffx.5315.1.A1_s_at	CV236250	hypothetical protein	-	1e-90	At4g09800	RPS18C (S18 RIBOSOMAL PROTEIN)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.97	PtpAffx.14802.1.A1_s_at	CV250490	hypothetical protein	-	5e-62	At2g39390	60S ribosomal protein L35 (RPL35B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.97	Ptp.5633.1.S1_x_at	CV280439	-	-	9e-37	At4g34670	40S ribosomal protein S3A (RPS3aB)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.97	Ptp.5633.1.S1_at	CV280439	hypothetical protein	-	9e-37	At4g34670	40S ribosomal protein S3A (RPS3aB)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.98	PtpAffx.11485.3.A1_x_at	CV235651	hypothetical protein	-	9e-23	At2g40590	40S ribosomal protein S26 (RPS26B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.97	PtpAffx.18640.1.A1_s_at	CV239752	hypothetical protein	-	3e-45	At5g18380	40S ribosomal protein S16 (RPS16C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	95.6	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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