Co-expression analysis

Gene ID	PtpAffx.53128.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g44890: RPL9 (RIBOSOMAL PROTEIN L9) (HF=7e-25)
Module size	6 genes
NF	0.73
%ile	97.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	93.6	0.98	PtpAffx.53128.1.S1_at	CV238625	-	-	7e-25	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.98	PtpAffx.14790.1.A1_s_at	CK091627	hypothetical protein	-	1e-1	At2g24090	ribosomal protein L35 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.98	Ptp.5695.1.S1_a_at	CV237546	hypothetical protein	-	7e-21	At1g48350	ribosomal protein L18 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.98	Ptp.6638.1.S1_s_at	CV244428	hypothetical protein	-	5e-22	At1g79850	RPS17 (RIBOSOMAL PROTEIN S17)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.98	PtpAffx.9317.1.S1_at	CV241750	hypothetical protein	-	1e+0	At4g14385	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.98	Ptp.5722.1.S1_at	CV226697	hypothetical protein	-	2e-15	At1g64510	ribosomal protein S6 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9	87.2	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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