Co-expression analysis

Gene ID PtpAffx.52716.3.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g20605: - (HF=4e+0)
Module size 6 genes
NF 0.13
%ile 24.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8397.00.90PtpAffx.52716.3.A1_atCV259272hypothetical protein-4e+0At2g20605-O.I.H.G.S.X.
0.2340.50.94Ptp.2766.1.S1_s_atCX184787hypothetical protein-2e-2At1g30620MUR4 (MURUS 4)O.I.H.G.S.X.
0.1423.50.90Ptp.4976.1.A1_atCV267703hypothetical protein-7e-3At1g31440SH3 domain-containing protein 1 (SH3P1)O.I.H.G.S.X.
0.1321.60.91PtpAffx.201967.1.S1_atpmrna3927sucrose proton symporter-1e-30At1g09960SUT4 (SUCROSE TRANSPORTER 4)O.I.H.G.S.X.
0.0711.60.90Ptp.5049.2.S1_s_atBU888047hypothetical protein-5e+0At5g59305unknown proteinO.I.H.G.S.X.
0.069.80.90PtpAffx.200651.1.S1_atpmrna1267hypothetical protein-3e-6At3g16350myb family transcription factorO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.898.7GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.696.2GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.894.9GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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