Co-expression analysis

Gene ID	PtpAffx.52716.1.A1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g17380: pyruvate decarboxylase family protein (HF=6e-28)
Module size	6 genes
NF	0.53
%ile	84.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.96	PtpAffx.52716.1.A1_s_at	CK096645	hypothetical protein	-	6e-28	At5g17380	pyruvate decarboxylase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.97	PtpAffx.42410.1.S1_s_at	BP922740	hypothetical protein	-	1e-20	At1g64140	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.97	PtpAffx.42410.1.S1_at	BP922740	hypothetical protein	-	1e-20	At1g64140	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.97	PtpAffx.131455.1.S1_s_at	CK102810	hypothetical protein	-	7e-39	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.97	Ptp.5819.1.S1_at	CK114175	hypothetical protein	-	3e-18	At5g59420	ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.97	PtpAffx.116322.1.S1_at	CK106873	histone acetyltransferase /// histone acetyltransferase	-	1e-34	At1g79000	HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	93.5	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1	93.2	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

A co-expression module including the grape gene, 1616769_at, orthologous to the query gene, PtpAffx.52716.1.A1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1616769_at	At5g17380	-	-	2e+0	At2g47880	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.09	9.4	1616428_at	At5g17380	-	-	4e+0	At1g21900	emp24/gp25L/p24 family protein	O.I.	H.G.	S.X.	Please select
0.06	6.8	1607123_at	At5g17380	-	-	2e-9	At1g11870	SRS (SERYL-TRNA SYNTHETASE)	O.I.	H.G.	S.X.	Please select
0.05	6.0	1608881_at	At5g17380	-	-	2e-1	At4g34690	unknown protein	O.I.	H.G.	S.X.	Please select
0.05	6.0	1622815_at	At5g17380	-	-	1e+0	At1g68935	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	5.2	1614129_at	At5g17380	hypothetical protein LOC100249542	-	2e-26	At3g50790	late embryogenesis abundant protein, putative / LEA protein, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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