CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.52716.1.A1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g17380: pyruvate decarboxylase family protein (HF=6e-28)

Module size 6 genes

NF 0.53

%ile 84.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 0.96 PtpAffx.52716.1.A1_s_at CK096645 hypothetical protein - 6e-28 At5g17380 pyruvate decarboxylase family protein O.I. H.G. S.X.
0.63 88.1 0.97 PtpAffx.42410.1.S1_s_at BP922740 hypothetical protein - 1e-20 At1g64140 - O.I. H.G. S.X.
0.61 87.0 0.97 PtpAffx.42410.1.S1_at BP922740 hypothetical protein - 1e-20 At1g64140 - O.I. H.G. S.X.
0.46 73.7 0.97 PtpAffx.131455.1.S1_s_at CK102810 hypothetical protein - 7e-39 At4g02570 ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) O.I. H.G. S.X.
0.38 63.7 0.97 Ptp.5819.1.S1_at CK114175 hypothetical protein - 3e-18 At5g59420 ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C) O.I. H.G. S.X.
0.33 57.5 0.97 PtpAffx.116322.1.S1_at CK106873 histone acetyltransferase /// histone acetyltransferase - 1e-34 At1g79000 HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	91.1	0.96	PtpAffx.52716.1.A1_s_at	CK096645	hypothetical protein	-	6e-28	At5g17380	pyruvate decarboxylase family protein	O.I.	H.G.	S.X.
0.63	88.1	0.97	PtpAffx.42410.1.S1_s_at	BP922740	hypothetical protein	-	1e-20	At1g64140	-	O.I.	H.G.	S.X.
0.61	87.0	0.97	PtpAffx.42410.1.S1_at	BP922740	hypothetical protein	-	1e-20	At1g64140	-	O.I.	H.G.	S.X.
0.46	73.7	0.97	PtpAffx.131455.1.S1_s_at	CK102810	hypothetical protein	-	7e-39	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	O.I.	H.G.	S.X.
0.38	63.7	0.97	Ptp.5819.1.S1_at	CK114175	hypothetical protein	-	3e-18	At5g59420	ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C)	O.I.	H.G.	S.X.
0.33	57.5	0.97	PtpAffx.116322.1.S1_at	CK106873	histone acetyltransferase /// histone acetyltransferase	-	1e-34	At1g79000	HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.2 93.5 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1 93.2 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM244436 Mmd infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3 89.8 GSM244438 Mmd infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3 89.8 GSM244433 Mlp infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2 89.3 GSM244431 non infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1 88.6 GSM244441 Mixed infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1 88.6 GSM244435 Mlp infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0 88.0 GSM244440 Mixed infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
3.2	93.5	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1	93.2	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

A co-expression module including the wheat gene, Ta.4301.2.S1_at, orthologous to the query gene, PtpAffx.52716.1.A1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.96 99.3 Ta.4301.2.S1_at At5g17380 - - 2e+0 At3g48800 sterile alpha motif (SAM) domain-containing protein O.I. H.G. S.X.
0.48 69.0 Ta.10025.1.S1_at At5g17380 - - 2e+1 At2g33470 GLTP1 (glycolipid transfer protein 1) O.I. H.G. S.X.
0.46 66.8 Ta.1602.2.S1_at At5g17380 - - 3e+0 At2g24970 unknown protein O.I. H.G. S.X.
0.45 65.2 Ta.1602.1.S1_a_at At5g17380 - - 2e+0 At5g55200 co-chaperone grpE protein, putative O.I. H.G. S.X.
0.42 60.9 Ta.12573.1.S1_at At5g17380 hypothetical LOC543010 - 2e-20 At1g27340 F-box family protein O.I. H.G. S.X.
0.41 59.6 Ta.9354.3.S1_x_at At5g17380 - - 1e-1 At3g61415 ASK21 (ARABIDOPSIS SKP1-LIKE 21) O.I. H.G. S.X.
0.41 59.6 Ta.28649.2.S1_x_at At5g17380 - - 1e-5 At4g19200 proline-rich family protein O.I. H.G. S.X.
0.40 58.4 Ta.4382.1.S1_at At5g17380 RING-H2 finger protein - 2e-29 At5g22000 RHF2A (RING-H2 GROUP F2A) O.I. H.G. S.X.
0.40 58.4 TaAffx.87551.1.S1_at At5g17380 - - 2e-10 At2g01680 ankyrin repeat family protein O.I. H.G. S.X.
0.38 54.7 TaAffx.129161.1.S1_at At5g17380 Serine/threonine protein kinase 1 - 8e-22 At4g31170 protein kinase family protein O.I. H.G. S.X.
0.35 49.8 Ta.6005.1.S1_x_at At5g17380 - - 2e+1 At5g64310 AGP1 (ARABINOGALACTAN PROTEIN 1) O.I. H.G. S.X.
0.35 49.8 Ta.2138.2.S1_x_at At5g17380 - - 1e+0 At1g55840 SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein O.I. H.G. S.X.
0.35 49.8 Ta.19822.1.A1_at At5g17380 - - 2e-21 At1g10430 PP2A-2 O.I. H.G. S.X.
0.34 48.1 Ta.12565.1.S1_at At5g17380 - - 2e-3 At4g24690 ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein O.I. H.G. S.X.
0.34 48.1 Ta.1709.1.S1_at At5g17380 - - 2e-53 At2g27600 SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) O.I. H.G. S.X.
0.33 46.9 Ta.19301.1.A1_x_at At5g17380 - - 3e+0 At3g63390 unknown protein O.I. H.G. S.X.
0.33 46.9 Ta.6005.1.S1_at At5g17380 - - 2e+1 At5g64310 AGP1 (ARABINOGALACTAN PROTEIN 1) O.I. H.G. S.X.
0.32 44.4 Ta.12532.1.S1_at At5g17380 - - 2e-8 At5g52580 RAB GTPase activator O.I. H.G. S.X.
0.31 42.7 Ta.19301.1.A1_at At5g17380 - - 3e+0 At3g63390 unknown protein O.I. H.G. S.X.
0.31 42.7 Ta.11821.1.S1_a_at At5g17380 - - 1e+0 At3g52740 unknown protein O.I. H.G. S.X.
0.30 40.9 Ta.6290.1.S1_at At5g17380 - - 1e-10 At1g49010 myb family transcription factor O.I. H.G. S.X.
0.30 40.9 Ta.1602.1.S1_x_at At5g17380 - - 2e+0 At5g55200 co-chaperone grpE protein, putative O.I. H.G. S.X.
0.29 39.2 Ta.5033.2.S1_x_at At5g17380 - - 3e-1 At1g21130 O-methyltransferase, putative O.I. H.G. S.X.
0.29 39.2 Ta.1602.1.S1_at At5g17380 - - 2e+0 At5g55200 co-chaperone grpE protein, putative O.I. H.G. S.X.
0.29 39.2 Ta.384.1.S1_at At5g17380 - - 6e-2 At1g06550 enoyl-CoA hydratase/isomerase family protein O.I. H.G. S.X.
0.28 39.2 Ta.13180.1.S1_a_at At5g17380 - - 2e-9 At5g20165 unknown protein O.I. H.G. S.X.
0.28 39.2 Ta.11481.1.A1_at At5g17380 - - 4e-1 At3g59800 unknown protein O.I. H.G. S.X.
0.27 35.6 Ta.1198.1.S1_at At5g17380 - - 1e-8 At5g59890 ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) O.I. H.G. S.X.
0.27 35.6 Ta.3560.1.S1_s_at At5g17380 - - 2e-4 At3g47810 MAG1 (MAIGO 1) O.I. H.G. S.X.
0.25 32.1 Ta.6591.1.S1_at At5g17380 - - 6e-4 At2g33470 GLTP1 (glycolipid transfer protein 1) O.I. H.G. S.X.
0.23 29.0 TaAffx.104550.1.S1_at At5g17380 - - 2e-3 At1g79430 APL (ALTERED PHLOEM DEVELOPMENT) O.I. H.G. S.X.
0.22 27.1 Ta.7286.2.S1_a_at At5g17380 - - 5e+0 At5g19230 unknown protein O.I. H.G. S.X.
0.21 25.5 Ta.14485.1.S1_at At5g17380 Vacuolar ATPase subunit B1 - 3e-152 At1g76030 vacuolar ATP synthase subunit B / V-ATPase B subunit / vacuolar proton pump B subunit / V-ATPase 57 kDa subunit O.I. H.G. S.X.
0.21 25.5 Ta.2615.1.S1_x_at At5g17380 - - 2e-8 At1g67785 unknown protein O.I. H.G. S.X.
0.20 24.0 Ta.1031.2.S1_x_at At5g17380 - - 3e-55 At5g11770 NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial O.I. H.G. S.X.
0.20 24.0 Ta.28673.1.S1_at At5g17380 Vacuolar ATPase subunit F - 3e-15 At4g02620 vacuolar ATPase subunit F family protein O.I. H.G. S.X.
0.19 22.4 Ta.1031.2.S1_at At5g17380 - - 5e-51 At5g11770 NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial O.I. H.G. S.X.
0.18 21.0 Ta.8167.2.S1_s_at At5g17380 - - 4e-1 At3g53610 ATRAB8 O.I. H.G. S.X.
0.14 15.8 Ta.14227.1.S1_at At5g17380 - - 1e-7 At5g35680 eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.96	99.3	Ta.4301.2.S1_at	At5g17380	-	-	2e+0	At3g48800	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.
0.48	69.0	Ta.10025.1.S1_at	At5g17380	-	-	2e+1	At2g33470	GLTP1 (glycolipid transfer protein 1)	O.I.	H.G.	S.X.
0.46	66.8	Ta.1602.2.S1_at	At5g17380	-	-	3e+0	At2g24970	unknown protein	O.I.	H.G.	S.X.
0.45	65.2	Ta.1602.1.S1_a_at	At5g17380	-	-	2e+0	At5g55200	co-chaperone grpE protein, putative	O.I.	H.G.	S.X.
0.42	60.9	Ta.12573.1.S1_at	At5g17380	hypothetical LOC543010	-	2e-20	At1g27340	F-box family protein	O.I.	H.G.	S.X.
0.41	59.6	Ta.9354.3.S1_x_at	At5g17380	-	-	1e-1	At3g61415	ASK21 (ARABIDOPSIS SKP1-LIKE 21)	O.I.	H.G.	S.X.
0.41	59.6	Ta.28649.2.S1_x_at	At5g17380	-	-	1e-5	At4g19200	proline-rich family protein	O.I.	H.G.	S.X.
0.40	58.4	Ta.4382.1.S1_at	At5g17380	RING-H2 finger protein	-	2e-29	At5g22000	RHF2A (RING-H2 GROUP F2A)	O.I.	H.G.	S.X.
0.40	58.4	TaAffx.87551.1.S1_at	At5g17380	-	-	2e-10	At2g01680	ankyrin repeat family protein	O.I.	H.G.	S.X.
0.38	54.7	TaAffx.129161.1.S1_at	At5g17380	Serine/threonine protein kinase 1	-	8e-22	At4g31170	protein kinase family protein	O.I.	H.G.	S.X.
0.35	49.8	Ta.6005.1.S1_x_at	At5g17380	-	-	2e+1	At5g64310	AGP1 (ARABINOGALACTAN PROTEIN 1)	O.I.	H.G.	S.X.
0.35	49.8	Ta.2138.2.S1_x_at	At5g17380	-	-	1e+0	At1g55840	SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein	O.I.	H.G.	S.X.
0.35	49.8	Ta.19822.1.A1_at	At5g17380	-	-	2e-21	At1g10430	PP2A-2	O.I.	H.G.	S.X.
0.34	48.1	Ta.12565.1.S1_at	At5g17380	-	-	2e-3	At4g24690	ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein	O.I.	H.G.	S.X.
0.34	48.1	Ta.1709.1.S1_at	At5g17380	-	-	2e-53	At2g27600	SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)	O.I.	H.G.	S.X.
0.33	46.9	Ta.19301.1.A1_x_at	At5g17380	-	-	3e+0	At3g63390	unknown protein	O.I.	H.G.	S.X.
0.33	46.9	Ta.6005.1.S1_at	At5g17380	-	-	2e+1	At5g64310	AGP1 (ARABINOGALACTAN PROTEIN 1)	O.I.	H.G.	S.X.
0.32	44.4	Ta.12532.1.S1_at	At5g17380	-	-	2e-8	At5g52580	RAB GTPase activator	O.I.	H.G.	S.X.
0.31	42.7	Ta.19301.1.A1_at	At5g17380	-	-	3e+0	At3g63390	unknown protein	O.I.	H.G.	S.X.
0.31	42.7	Ta.11821.1.S1_a_at	At5g17380	-	-	1e+0	At3g52740	unknown protein	O.I.	H.G.	S.X.
0.30	40.9	Ta.6290.1.S1_at	At5g17380	-	-	1e-10	At1g49010	myb family transcription factor	O.I.	H.G.	S.X.
0.30	40.9	Ta.1602.1.S1_x_at	At5g17380	-	-	2e+0	At5g55200	co-chaperone grpE protein, putative	O.I.	H.G.	S.X.
0.29	39.2	Ta.5033.2.S1_x_at	At5g17380	-	-	3e-1	At1g21130	O-methyltransferase, putative	O.I.	H.G.	S.X.
0.29	39.2	Ta.1602.1.S1_at	At5g17380	-	-	2e+0	At5g55200	co-chaperone grpE protein, putative	O.I.	H.G.	S.X.
0.29	39.2	Ta.384.1.S1_at	At5g17380	-	-	6e-2	At1g06550	enoyl-CoA hydratase/isomerase family protein	O.I.	H.G.	S.X.
0.28	39.2	Ta.13180.1.S1_a_at	At5g17380	-	-	2e-9	At5g20165	unknown protein	O.I.	H.G.	S.X.
0.28	39.2	Ta.11481.1.A1_at	At5g17380	-	-	4e-1	At3g59800	unknown protein	O.I.	H.G.	S.X.
0.27	35.6	Ta.1198.1.S1_at	At5g17380	-	-	1e-8	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	O.I.	H.G.	S.X.
0.27	35.6	Ta.3560.1.S1_s_at	At5g17380	-	-	2e-4	At3g47810	MAG1 (MAIGO 1)	O.I.	H.G.	S.X.
0.25	32.1	Ta.6591.1.S1_at	At5g17380	-	-	6e-4	At2g33470	GLTP1 (glycolipid transfer protein 1)	O.I.	H.G.	S.X.
0.23	29.0	TaAffx.104550.1.S1_at	At5g17380	-	-	2e-3	At1g79430	APL (ALTERED PHLOEM DEVELOPMENT)	O.I.	H.G.	S.X.
0.22	27.1	Ta.7286.2.S1_a_at	At5g17380	-	-	5e+0	At5g19230	unknown protein	O.I.	H.G.	S.X.
0.21	25.5	Ta.14485.1.S1_at	At5g17380	Vacuolar ATPase subunit B1	-	3e-152	At1g76030	vacuolar ATP synthase subunit B / V-ATPase B subunit / vacuolar proton pump B subunit / V-ATPase 57 kDa subunit	O.I.	H.G.	S.X.
0.21	25.5	Ta.2615.1.S1_x_at	At5g17380	-	-	2e-8	At1g67785	unknown protein	O.I.	H.G.	S.X.
0.20	24.0	Ta.1031.2.S1_x_at	At5g17380	-	-	3e-55	At5g11770	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial	O.I.	H.G.	S.X.
0.20	24.0	Ta.28673.1.S1_at	At5g17380	Vacuolar ATPase subunit F	-	3e-15	At4g02620	vacuolar ATPase subunit F family protein	O.I.	H.G.	S.X.
0.19	22.4	Ta.1031.2.S1_at	At5g17380	-	-	5e-51	At5g11770	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial	O.I.	H.G.	S.X.
0.18	21.0	Ta.8167.2.S1_s_at	At5g17380	-	-	4e-1	At3g53610	ATRAB8	O.I.	H.G.	S.X.
0.14	15.8	Ta.14227.1.S1_at	At5g17380	-	-	1e-7	At5g35680	eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays

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Gene ID	PtpAffx.52716.1.A1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g17380: pyruvate decarboxylase family protein (HF=6e-28)
Module size	6 genes
NF	0.53
%ile	84.1

Co-expression analysis

Gene ID PtpAffx.52716.1.A1_s_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At5g17380: pyruvate decarboxylase family protein (HF=6e-28) Module size 6 genes NF 0.53 %ile 84.1

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaVitis_viniferaZea_mays

Gene ID PtpAffx.52716.1.A1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g17380: pyruvate decarboxylase family protein (HF=6e-28)

Module size 6 genes

NF 0.53

%ile 84.1

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays