CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.52716.1.A1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g17380: pyruvate decarboxylase family protein (HF=6e-28)

Module size 6 genes

NF 0.53

%ile 84.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 0.96 PtpAffx.52716.1.A1_s_at CK096645 hypothetical protein - 6e-28 At5g17380 pyruvate decarboxylase family protein O.I. H.G. S.X.
0.63 88.1 0.97 PtpAffx.42410.1.S1_s_at BP922740 hypothetical protein - 1e-20 At1g64140 - O.I. H.G. S.X.
0.61 87.0 0.97 PtpAffx.42410.1.S1_at BP922740 hypothetical protein - 1e-20 At1g64140 - O.I. H.G. S.X.
0.46 73.7 0.97 PtpAffx.131455.1.S1_s_at CK102810 hypothetical protein - 7e-39 At4g02570 ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) O.I. H.G. S.X.
0.38 63.7 0.97 Ptp.5819.1.S1_at CK114175 hypothetical protein - 3e-18 At5g59420 ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C) O.I. H.G. S.X.
0.33 57.5 0.97 PtpAffx.116322.1.S1_at CK106873 histone acetyltransferase /// histone acetyltransferase - 1e-34 At1g79000 HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.2 93.5 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1 93.2 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM244436 Mmd infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3 89.8 GSM244438 Mmd infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3 89.8 GSM244433 Mlp infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2 89.3 GSM244431 non infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1 88.6 GSM244441 Mixed infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1 88.6 GSM244435 Mlp infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0 88.0 GSM244440 Mixed infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g17380, orthologous to the query gene, PtpAffx.52716.1.A1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.27 26.2 At5g17380 831604 pyruvate decarboxylase family protein F:pyruvate decarboxylase activity, magnesium ion binding, thiamin pyrophosphate binding, transferase activity, catalytic activity;P:unknown;C:cellular_component unknown;OBFPAMV O.I. H.G. S.X.
0.31 33.8 At4g26970 828805 aconitate hydratase/ copper ion binding F:aconitate hydratase activity, copper ion binding;P:response to cadmium ion;C:mitochondrion, chloroplast;OBMFAP O.I. H.G. S.X.
0.25 22.6 At4g33540 829493 metallo-beta-lactamase family protein F:hydrolase activity, catalytic activity;P:response to arsenic, metabolic process;C:chloroplast;OBAPMF O.I. H.G. S.X.
0.23 19.3 At2g17720 816281 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:protein metabolic process, peptidyl-proline hydroxylation to 4-hydroxy-L-proline;C:unknown;MOPBFV O.I. H.G. S.X.
0.23 19.3 At5g03630 831774 ATMDAR2 F:monodehydroascorbate reductase (NADH) activity;P:response to cadmium ion, response to salt stress;C:cytosol;BOMFPA O.I. H.G. S.X.
0.22 17.5 At3g11330 820306 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:unknown;MPBOFAV O.I. H.G. S.X.
0.20 14.4 At4g16760 827381 ACX1 (ACYL-COA OXIDASE 1) Encodes a medium to long-chain acyl-CoA oxidase. Catalyzes the first step of fatty acid beta-oxidation. Involved in jasmonate biosynthesis. Gene expression is induced by wounding, drought stress, abscisic acid, and jasmonate. O.I. H.G. S.X.
0.18 11.4 At2g17130 816218 IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2) NAD+ dependent isocitrate dehydrogenase subunit 2 (IDH2) O.I. H.G. S.X.
0.15 7.8 At3g17810 821049 dihydroorotate dehydrogenase family protein / dihydroorotate oxidase family protein F:oxidoreductase activity, acting on the CH-CH group of donors, catalytic activity, dihydroorotate oxidase activity, dihydroorotate dehydrogenase activity;P:'de novo' pyrimidine base biosynthetic process, UMP biosynthetic process, metabolic process;C:chloroplast;BOMAFP O.I. H.G. S.X.
0.14 6.8 At1g22410 838847 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative F:3-deoxy-7-phosphoheptulonate synthase activity;P:aromatic amino acid family biosynthetic process;C:membrane;OBPF O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage