Co-expression analysis

Gene ID PtpAffx.5252.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g22845: emp24/gp25L/p24 protein-related (HF=3e-61)
Module size 6 genes
NF 0.53
%ile 83.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.96PtpAffx.5252.1.A1_atCV259090hypothetical protein-3e-61At3g22845emp24/gp25L/p24 protein-relatedO.I.H.G.S.X.
0.5078.60.97PtpAffx.104716.1.S1_a_atCK096563hypothetical protein-3e-8At4g16444unknown proteinO.I.H.G.S.X.
0.4774.60.96Ptp.7571.1.S1_s_atCK092545hypothetical protein-4e+0At5g55131-O.I.H.G.S.X.
0.4369.70.96Ptp.2415.1.A1_s_atCX175044hypothetical protein-6e-13At3g23300dehydration-responsive protein-relatedO.I.H.G.S.X.
0.4067.00.97Ptp.5782.1.S1_atCV271204hypothetical protein-2e-77At5g47200ATRAB1AO.I.H.G.S.X.
0.3357.50.96Ptp.2456.2.S1_a_atCV269924hypothetical protein-2e-12At5g67590FRO1 (FROSTBITE1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.794.7GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage