Co-expression analysis

Gene ID PtpAffx.5090.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g09810: isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative (HF=1e-1)
Module size 6 genes
NF 0.50
%ile 80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.95PtpAffx.5090.1.A1_atCV267261hypothetical protein-1e-1At3g09810isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putativeO.I.H.G.S.X.
0.5078.60.95PtpAffx.147676.1.A1_atCV230317hypothetical protein-3e-32At4g30600signal recognition particle receptor alpha subunit family proteinO.I.H.G.S.X.
0.5078.60.95PtpAffx.1601.13.S1_a_atCV240068hypothetical protein-5e+0At5g44306unknown proteinO.I.H.G.S.X.
0.4673.70.95PtpAffx.38755.2.S1_s_atCV252052hypothetical protein-2e-56At3g49870ATARLA1C (ADP-ribosylation factor-like A1C)O.I.H.G.S.X.
0.4673.70.95PtpAffx.2333.1.S1_atCK091733hypothetical protein-2e+0At1g47720OSB1 (Organellar Single-stranded)O.I.H.G.S.X.
0.3357.50.94PtpAffx.107925.1.A1_atDN485210hypothetical protein-8e-1At5g22380anac090 (Arabidopsis NAC domain containing protein 90)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5582.20.90PtpAffx.38051.1.A1_atCV228403--8e-1At4g15610integral membrane family proteinO.I.H.G.S.X.
0.4471.90.92PtpAffx.160068.2.S1_atCV243018--2e-2At5g02730allergen V5/Tpx-1-related family proteinO.I.H.G.S.X.
0.4369.70.88PtpAffx.44065.1.A1_atCV246435hypothetical protein-4e+0At3g61980serine protease inhibitor, Kazal-type family proteinO.I.H.G.S.X.
0.4067.00.91PtpAffx.454.7.A1_x_atCV281713hypothetical protein-2e-100At3g56800CAM3 (CALMODULIN 3)O.I.H.G.S.X.
0.4067.00.93PtpAffx.212348.1.S1_atpmrna24204hypothetical protein-1e-14At5g49650xylulose kinase, putativeO.I.H.G.S.X.
0.4067.00.94PtpAffx.88343.1.S1_atCV271081--1e-11At5g06370NC domain-containing proteinO.I.H.G.S.X.
0.3661.60.83PtpAffx.214325.1.S1_atpmrna27858hypothetical protein-1e+0At5g22120unknown proteinO.I.H.G.S.X.
0.3661.60.84PtpAffx.128091.1.A1_atCV231562hypothetical protein-1e+0At5g03590GDSL-motif lipase/hydrolase protein-relatedO.I.H.G.S.X.
0.3661.60.93PtpAffx.4645.3.S1_a_atDN494699hypothetical protein-2e-1At5g40260nodulin MtN3 family proteinO.I.H.G.S.X.
0.3559.70.94PtpAffx.206852.1.S1_atpmrna13612hypothetical protein-3e-136At4g31750WIN2 (HOPW1-1-INTERACTING 2)O.I.H.G.S.X.
0.3559.70.94PtpAffx.222478.1.S1_atpmrna39929hypothetical protein-1e-48At1g67190F-box family proteinO.I.H.G.S.X.
0.3357.50.92PtpAffx.222297.1.S1_atpmrna39615hypothetical protein-6e-5At2g43490RAB GTPase activatorO.I.H.G.S.X.
0.3357.50.92PtpAffx.653.15.S1_atCV253530--8e-2At1g26250proline-rich extensin, putativeO.I.H.G.S.X.
0.3153.70.90PtpAffx.17630.1.S1_atCV279137hypothetical protein-1e+0At3g24510-O.I.H.G.S.X.
0.2950.50.93PtpAffx.43444.1.A1_atCV271371hypothetical protein-4e-1At4g24070carbon-carbon lyaseO.I.H.G.S.X.
0.2747.10.95PtpAffx.5890.1.S1_atCV230515hypothetical protein-4e-15At5g17770ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)O.I.H.G.S.X.
0.2747.10.90PtpAffx.144424.1.S1_atCK103024--1e-3At2g15730unknown proteinO.I.H.G.S.X.
0.2747.10.90PtpAffx.454.4.A1_x_atCV271836hypothetical protein-9e-98At3g56800CAM3 (CALMODULIN 3)O.I.H.G.S.X.
0.2747.10.95PtpAffx.5906.4.A1_atBU873598hypothetical protein-8e-29At4g21560VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1)O.I.H.G.S.X.
0.2645.20.93PtpAffx.33391.2.S1_a_atAJ770047--1e-63At2g25300transferase, transferring glycosyl groups / transferase, transferring hexosyl groupsO.I.H.G.S.X.
0.2645.20.93PtpAffx.205612.1.S1_atpmrna11079hypothetical protein-1e-17At1g03970GBF4O.I.H.G.S.X.
0.2543.60.93PtpAffx.212348.1.S1_s_atpmrna24204hypothetical protein-1e-14At5g49650xylulose kinase, putativeO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.395.8GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.794.7GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.694.5GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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