Co-expression analysis

Gene ID	PtpAffx.5090.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g09810: isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative (HF=1e-1)
Module size	6 genes
NF	0.50
%ile	80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.95	PtpAffx.5090.1.A1_at	CV267261	hypothetical protein	-	1e-1	At3g09810	isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	PtpAffx.147676.1.A1_at	CV230317	hypothetical protein	-	3e-32	At4g30600	signal recognition particle receptor alpha subunit family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	PtpAffx.1601.13.S1_a_at	CV240068	hypothetical protein	-	5e+0	At5g44306	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.95	PtpAffx.38755.2.S1_s_at	CV252052	hypothetical protein	-	2e-56	At3g49870	ATARLA1C (ADP-ribosylation factor-like A1C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.95	PtpAffx.2333.1.S1_at	CK091733	hypothetical protein	-	2e+0	At1g47720	OSB1 (Organellar Single-stranded)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.94	PtpAffx.107925.1.A1_at	DN485210	hypothetical protein	-	8e-1	At5g22380	anac090 (Arabidopsis NAC domain containing protein 90)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	95.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the wheat gene, Ta.4943.2.S1_x_at, orthologous to the query gene, PtpAffx.5090.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.0	Ta.4943.2.S1_x_at	At3g09810	-	-	1e+0	At1g12400	DNA binding	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.5559.1.S1_at	At3g09810	-	-	1e-1	At3g22510	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	Ta.5395.1.A1_at	At3g09810	-	-	9e-9	At1g08125	Expressed protein	O.I.	H.G.	S.X.	Please select
0.11	12.4	Ta.1805.2.S1_a_at	At3g09810	-	-	5e-3	At4g03180	unknown protein	O.I.	H.G.	S.X.	Please select
0.08	9.4	Ta.15109.1.S1_at	At3g09810	-	-	3e-8	At4g21192	-	O.I.	H.G.	S.X.	Please select
0.07	8.6	Ta.4358.1.S1_s_at	At3g09810	-	-	1e-1	At4g39880	ribosomal protein L23 family protein	O.I.	H.G.	S.X.	Please select
0.07	8.6	TaAffx.38158.4.S1_s_at	At3g09810	-	-	1e-3	At2g44330	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage