Co-expression analysis

Gene ID PtpAffx.5090.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g09810: isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative (HF=1e-1)
Module size 6 genes
NF 0.50
%ile 80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.95PtpAffx.5090.1.A1_atCV267261hypothetical protein-1e-1At3g09810isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putativeO.I.H.G.S.X.
0.5078.60.95PtpAffx.147676.1.A1_atCV230317hypothetical protein-3e-32At4g30600signal recognition particle receptor alpha subunit family proteinO.I.H.G.S.X.
0.5078.60.95PtpAffx.1601.13.S1_a_atCV240068hypothetical protein-5e+0At5g44306unknown proteinO.I.H.G.S.X.
0.4673.70.95PtpAffx.38755.2.S1_s_atCV252052hypothetical protein-2e-56At3g49870ATARLA1C (ADP-ribosylation factor-like A1C)O.I.H.G.S.X.
0.4673.70.95PtpAffx.2333.1.S1_atCK091733hypothetical protein-2e+0At1g47720OSB1 (Organellar Single-stranded)O.I.H.G.S.X.
0.3357.50.94PtpAffx.107925.1.A1_atDN485210hypothetical protein-8e-1At5g22380anac090 (Arabidopsis NAC domain containing protein 90)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.395.8GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.794.7GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.694.5GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.4943.2.S1_x_at, orthologous to the query gene, PtpAffx.5090.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6081.0Ta.4943.2.S1_x_atAt3g09810--1e+0At1g12400DNA bindingO.I.H.G.S.X.
0.3549.8Ta.5559.1.S1_atAt3g09810--1e-1At3g22510unknown proteinO.I.H.G.S.X.
0.2227.1Ta.5395.1.A1_atAt3g09810--9e-9At1g08125Expressed proteinO.I.H.G.S.X.
0.1112.4Ta.1805.2.S1_a_atAt3g09810--5e-3At4g03180unknown proteinO.I.H.G.S.X.
0.089.4Ta.15109.1.S1_atAt3g09810--3e-8At4g21192-O.I.H.G.S.X.
0.078.6Ta.4358.1.S1_s_atAt3g09810--1e-1At4g39880ribosomal protein L23 family proteinO.I.H.G.S.X.
0.078.6TaAffx.38158.4.S1_s_atAt3g09810--1e-3At2g44330zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays



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