CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.5090.1.A1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g09810: isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative (HF=1e-1)

Module size 6 genes

NF 0.50

%ile 80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 0.95 PtpAffx.5090.1.A1_at CV267261 hypothetical protein - 1e-1 At3g09810 isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative O.I. H.G. S.X.
0.50 78.6 0.95 PtpAffx.147676.1.A1_at CV230317 hypothetical protein - 3e-32 At4g30600 signal recognition particle receptor alpha subunit family protein O.I. H.G. S.X.
0.50 78.6 0.95 PtpAffx.1601.13.S1_a_at CV240068 hypothetical protein - 5e+0 At5g44306 unknown protein O.I. H.G. S.X.
0.46 73.7 0.95 PtpAffx.38755.2.S1_s_at CV252052 hypothetical protein - 2e-56 At3g49870 ATARLA1C (ADP-ribosylation factor-like A1C) O.I. H.G. S.X.
0.46 73.7 0.95 PtpAffx.2333.1.S1_at CK091733 hypothetical protein - 2e+0 At1g47720 OSB1 (Organellar Single-stranded) O.I. H.G. S.X.
0.33 57.5 0.94 PtpAffx.107925.1.A1_at DN485210 hypothetical protein - 8e-1 At5g22380 anac090 (Arabidopsis NAC domain containing protein 90) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.3 95.8 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.6 94.5 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the rice gene, Os07g0573600, orthologous to the query gene, PtpAffx.5090.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 Os07g0573600 At3g09810 - REX1 DNA Repair family protein 9e-2 At1g12400 DNA binding O.I. H.G. S.X.
0.25 24.1 Os01g0559300 At3g09810 - Conserved hypothetical protein 1e-4 At4g26240 unknown protein O.I. H.G. S.X.
0.25 24.1 Os02g0753200 At3g09810 - Conserved hypothetical protein 6e-10 At5g64160 unknown protein O.I. H.G. S.X.
0.15 10.3 Os07g0562900 At3g09810 - Conserved hypothetical protein 1e+0 At4g27900 - O.I. H.G. S.X.
0.13 8.2 Os02g0730500 At3g09810 - Conserved hypothetical protein 4e-2 At1g54770 - O.I. H.G. S.X.
0.11 6.5 Os08g0171100 At3g09810 - AINTEGUMENTA-like protein 2e-2 At4g37750 ANT (AINTEGUMENTA) O.I. H.G. S.X.
0.10 5.7 Os07g0192300 At3g09810 - Heat shock protein DnaJ, N-terminal domaincontaining protein 6e-14 At3g09700 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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