Co-expression analysis

Gene ID PtpAffx.5090.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g09810: isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative (HF=1e-1)
Module size 6 genes
NF 0.50
%ile 80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.95PtpAffx.5090.1.A1_atCV267261hypothetical protein-1e-1At3g09810isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putativeO.I.H.G.S.X.
0.5078.60.95PtpAffx.147676.1.A1_atCV230317hypothetical protein-3e-32At4g30600signal recognition particle receptor alpha subunit family proteinO.I.H.G.S.X.
0.5078.60.95PtpAffx.1601.13.S1_a_atCV240068hypothetical protein-5e+0At5g44306unknown proteinO.I.H.G.S.X.
0.4673.70.95PtpAffx.38755.2.S1_s_atCV252052hypothetical protein-2e-56At3g49870ATARLA1C (ADP-ribosylation factor-like A1C)O.I.H.G.S.X.
0.4673.70.95PtpAffx.2333.1.S1_atCK091733hypothetical protein-2e+0At1g47720OSB1 (Organellar Single-stranded)O.I.H.G.S.X.
0.3357.50.94PtpAffx.107925.1.A1_atDN485210hypothetical protein-8e-1At5g22380anac090 (Arabidopsis NAC domain containing protein 90)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.395.8GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.794.7GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.694.5GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig20430_at, orthologous to the query gene, PtpAffx.5090.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9599.2Contig20430_atAt3g09810--5e+0At2g47950unknown proteinO.I.H.G.S.X.
0.6784.7HVSMEa0001K19r2_atAt3g09810--1e+1At5g59970histone H4O.I.H.G.S.X.
0.5874.9Contig2864_s_atAt3g09810--1e-1At2g32860BGLU33 (BETA GLUCOSIDASE 33)O.I.H.G.S.X.
0.5572.0Contig8517_atAt3g09810--4e-1At1g30370lipase class 3 family proteinO.I.H.G.S.X.
0.5167.5HVSMEi0021J08r2_x_atAt3g09810--1e+1At5g37610voltage-gated anion channelO.I.H.G.S.X.
0.5167.5Contig15291_atAt3g09810--1e+0At4g12860UNE14 (unfertilized embryo sac 14)O.I.H.G.S.X.
0.5167.5Contig5_x_atAt3g09810--7e+0At2g40220ABI4 (ABA INSENSITIVE 4)O.I.H.G.S.X.
0.5167.5Contig14816_s_atAt3g09810--9e+0At5g07200YAP169O.I.H.G.S.X.
0.4762.2Contig6459_atAt3g09810--1e+0At5g03995unknown proteinO.I.H.G.S.X.
0.4661.0Contig3227_atAt3g09810--9e-5At1g64750ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))O.I.H.G.S.X.
0.4559.3Contig6202_atAt3g09810--2e-16At2g14260PIPO.I.H.G.S.X.
0.4559.3Contig5200_atAt3g09810--1e-5At3g53110LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4)O.I.H.G.S.X.
0.4559.3Contig502_x_atAt3g09810--2e+0At3g49820unknown proteinO.I.H.G.S.X.
0.4559.3Contig5704_atAt3g09810--2e-1At1g49640hydrolaseO.I.H.G.S.X.
0.4356.4Contig2412_atAt3g09810--3e-2At4g21280oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ)O.I.H.G.S.X.
0.4255.2Contig1523_atAt3g09810--9e-40At1g15820LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6)O.I.H.G.S.X.
0.3950.5Contig20835_atAt3g09810--3e-1At5g614502-phosphoglycerate kinase-relatedO.I.H.G.S.X.
0.3849.5Contig6363_atAt3g09810--8e-2At2g26980CIPK3 (CBL-INTERACTING PROTEIN KINASE 3)O.I.H.G.S.X.
0.3849.5Contig5784_atAt3g09810--2e-16At1g12600-O.I.H.G.S.X.
0.3647.1HA10A05u_s_atAt3g09810--4e-2At3g08940LHCB4.2 (light harvesting complex PSII)O.I.H.G.S.X.
0.3545.1Contig16042_atAt3g09810--3e-5At1g76900AtTLP1 (TUBBY LIKE PROTEIN 1)O.I.H.G.S.X.
0.3342.6Contig8881_atAt3g09810--9e-3At1g31760SWIB complex BAF60b domain-containing proteinO.I.H.G.S.X.
0.3342.6Contig9532_atAt3g09810--2e+0At5g23100unknown proteinO.I.H.G.S.X.
0.3240.3Contig5030_atAt3g09810--4e-33At2g30390FC2 (FERROCHELATASE 2)O.I.H.G.S.X.
0.3037.0Contig3911_s_atAt3g09810--4e-56At5g08290YLS8O.I.H.G.S.X.
0.2835.5Contig6420_atAt3g09810--5e-5At3g61140FUS6 (FUSCA 6)O.I.H.G.S.X.
0.2732.1Contig5050_s_atAt3g09810--8e-2At1g26920unknown proteinO.I.H.G.S.X.
0.2732.1Contig51_atAt3g09810--4e+0At3g13970APG12B (AUTOPHAGY 12 B)O.I.H.G.S.X.
0.2630.4rbasd17i02_s_atAt3g09810--9e-35At2g21330fructose-bisphosphate aldolase, putativeO.I.H.G.S.X.
0.1412.9Contig2925_atAt3g09810--1e-28At5g55160SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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