Co-expression analysis

Gene ID PtpAffx.5090.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g09810: isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative (HF=1e-1)
Module size 6 genes
NF 0.50
%ile 80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.95PtpAffx.5090.1.A1_atCV267261hypothetical protein-1e-1At3g09810isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putativeO.I.H.G.S.X.
0.5078.60.95PtpAffx.147676.1.A1_atCV230317hypothetical protein-3e-32At4g30600signal recognition particle receptor alpha subunit family proteinO.I.H.G.S.X.
0.5078.60.95PtpAffx.1601.13.S1_a_atCV240068hypothetical protein-5e+0At5g44306unknown proteinO.I.H.G.S.X.
0.4673.70.95PtpAffx.38755.2.S1_s_atCV252052hypothetical protein-2e-56At3g49870ATARLA1C (ADP-ribosylation factor-like A1C)O.I.H.G.S.X.
0.4673.70.95PtpAffx.2333.1.S1_atCK091733hypothetical protein-2e+0At1g47720OSB1 (Organellar Single-stranded)O.I.H.G.S.X.
0.3357.50.94PtpAffx.107925.1.A1_atDN485210hypothetical protein-8e-1At5g22380anac090 (Arabidopsis NAC domain containing protein 90)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.395.8GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.794.7GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.694.5GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, Gma.11413.1.A1_s_at, orthologous to the query gene, PtpAffx.5090.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9799.8Gma.11413.1.A1_s_atAt3g09810--3e+0At1g52342unknown proteinO.I.H.G.S.X.
0.4968.3Gma.4861.1.S1_atAt3g09810--5e-91At3g18140transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.4563.9Gma.9522.1.S1_atAt3g09810MYB transcription factor MYB107-6e-7At1g17520DNA-binding protein, putativeO.I.H.G.S.X.
0.3954.5Gma.3441.1.S1_atAt3g09810--4e-1At1g14205ribosomal protein L18 family proteinO.I.H.G.S.X.
0.3650.8Gma.3735.2.S1_atAt3g09810--1e-60At1g14400UBC1 (UBIQUITIN CARRIER PROTEIN 1)O.I.H.G.S.X.
0.3650.8Gma.15549.1.S1_atAt3g09810--2e-14At3g61113-O.I.H.G.S.X.
0.3447.2Gma.7443.1.S1_a_atAt3g09810--9e-3At4g30890UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24)O.I.H.G.S.X.
0.3447.2GmaAffx.86299.1.S1_atAt3g09810--1e-11At1g05640ankyrin repeat family proteinO.I.H.G.S.X.
0.3447.2Gma.8062.1.A1_a_atAt3g09810--1e-7At2g21630transport protein, putativeO.I.H.G.S.X.
0.3346.1Gma.6825.1.S1_s_atAt3g09810--3e-11At4g35980unknown proteinO.I.H.G.S.X.
0.3346.1Gma.2668.2.A1_atAt3g09810--4e-6At5g42520ATBPC6O.I.H.G.S.X.
0.3346.1Gma.17700.2.S1_atAt3g09810--2e-19At2g20760protein binding / structural moleculeO.I.H.G.S.X.
0.3243.7Gma.13106.1.S1_atAt3g09810beclin 1 protein-1e-60At3g61710autophagy protein Apg6 familyO.I.H.G.S.X.
0.3243.7Gma.15970.1.A1_atAt3g09810--3e+0At1g066402-oxoglutarate-dependent dioxygenase, putativeO.I.H.G.S.X.
0.3243.7Gma.13346.1.S1_atAt3g09810--6e-12At1g61780postsynaptic protein-relatedO.I.H.G.S.X.
0.3243.7Gma.10607.1.A1_atAt3g09810--8e-8At4g38480transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.3040.4Gma.4225.1.S1_a_atAt3g09810--6e-13At1g02680TAF13 (TBP-ASSOCIATED FACTOR 13)O.I.H.G.S.X.
0.3040.4GmaAffx.90871.1.S1_s_atAt3g09810--1e-21At1g36980unknown proteinO.I.H.G.S.X.
0.2939.0Gma.6112.1.S1_atAt3g09810urease accessory protein UreF-9e-9At1g21840UREF (urease accessory protein F)O.I.H.G.S.X.
0.2839.0GmaAffx.25928.1.S1_atAt3g09810--2e-18At3g15610transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.2633.9Gma.11129.1.S1_x_atAt3g09810--6e-119At3g05840ATSK12O.I.H.G.S.X.
0.2532.6Gma.1782.2.S1_a_atAt3g09810--5e-7At5g15400U-box domain-containing proteinO.I.H.G.S.X.
0.2329.9Gma.7574.1.A1_atAt3g09810--3e-8At1g14570UBX domain-containing proteinO.I.H.G.S.X.
0.2329.9Gma.10751.3.S1_x_atAt3g09810--8e-24At2g42680MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)O.I.H.G.S.X.
0.2329.9Gma.13044.1.S1_atAt3g09810--5e-3At5g62575unknown proteinO.I.H.G.S.X.
0.2329.9Gma.814.1.S1_s_atAt3g09810--2e+0At2g35280F-box family proteinO.I.H.G.S.X.
0.2025.1GmaAffx.86047.2.S1_atAt3g09810--2e-12At3g55830EPC1 (ECTOPICALLY PARTING CELLS)O.I.H.G.S.X.
0.1822.3GmaAffx.8927.1.S1_atAt3g09810--5e-32At4g39100SHL1 (short life)O.I.H.G.S.X.
0.1721.2Gma.6890.1.A1_s_atAt3g09810--1e-1At2g31710unknown proteinO.I.H.G.S.X.
0.1619.7Gma.5762.1.S1_atAt3g09810aminoalcoholphosphotransferase-2e-47At1g13560AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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