Co-expression analysis

Gene ID PtpAffx.50868.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g27080: harpin-induced protein-related / HIN1-related / harpin-responsive protein-related (HF=2e-12)
Module size 16 genes
NF 0.56
%ile 86.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.91PtpAffx.50868.1.A1_atCV229374hypothetical protein-2e-12At2g27080harpin-induced protein-related / HIN1-related / harpin-responsive protein-relatedO.I.H.G.S.X.
0.6588.60.90PtpAffx.27878.2.S1_a_atDN484017glutaredoxin /// glutaredoxin-1e-7At1g03850glutaredoxin family proteinO.I.H.G.S.X.
0.6388.10.90PtpAffx.86908.1.S1_atDN494910hypothetical protein-1e+0At5g28610-O.I.H.G.S.X.
0.5984.90.89PtpAffx.204806.1.S1_atpmrna9474hypothetical protein-2e-2At5g12340unknown proteinO.I.H.G.S.X.
0.5582.20.91PtpAffx.35610.1.A1_atCV257792hypothetical protein-1e-13At1g06180ATMYB13 (MYB DOMAIN PROTEIN 13)O.I.H.G.S.X.
0.5582.20.92PtpAffx.223981.1.S1_s_atpmrna42208hypothetical protein-2e-1At3g30845unknown proteinO.I.H.G.S.X.
0.5480.80.88PtpAffx.119343.2.A1_a_atBP936124hypothetical protein-4e-6At4g29780unknown proteinO.I.H.G.S.X.
0.5380.50.89PtpAffx.204767.1.S1_atpmrna9386hypothetical protein-7e-26At1g58290HEMA1O.I.H.G.S.X.
0.5380.50.90PtpAffx.59348.1.S1_atCA928346hypothetical protein-3e-1At5g08370AtAGAL2 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 2)O.I.H.G.S.X.
0.5178.90.91PtpAffx.106356.1.S1_s_atCX660277AP2/ERF domain-containing transcription factor-9e-2At5g19800hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.5178.90.92Ptp.7458.1.S1_atBU865438--5e-9At4g27280calcium-binding EF hand family proteinO.I.H.G.S.X.
0.5178.90.88Ptp.5231.1.S1_atCK089681SAUR family protein-6e+0At5g59760unknown proteinO.I.H.G.S.X.
0.5078.60.90PtpAffx.93687.1.S1_s_atBP927882AP2/ERF domain-containing transcription factor-1e+0At1g71450AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.4875.40.91PtpAffx.8810.1.S1_atCK096534AP2/ERF domain-containing transcription factor /// AP2/ERF domain-containing transcription factor-2e-34At1g21910AP2 domain-containing transcription factor family proteinO.I.H.G.S.X.
0.4673.70.93PtpAffx.119343.1.A1_a_atBP933189hypothetical protein-4e-10At5g12010unknown proteinO.I.H.G.S.X.
0.4471.90.90PtpAffx.64492.1.A1_atCV227213hypothetical protein-5e-3At1g69523UbiE/COQ5 methyltransferase family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.398.8GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
8.398.5GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.684.5GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.482.3GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.482.3GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.482.3GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.482.3GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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