Co-expression analysis

Gene ID	PtpAffx.50667.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g62200: embryo-specific protein-related (HF=1e+1)
Module size	6 genes
NF	0.30
%ile	53.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	73.7	0.85	PtpAffx.50667.1.A1_at	CV237201	-	-	1e+1	At5g62200	embryo-specific protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.85	PtpAffx.210347.1.S1_at	pmrna20341	hypothetical protein	-	1e-8	At4g27680	MSP1 protein, putative / intramitochondrial sorting protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.84	PtpAffx.221618.1.S1_at	pmrna38591	hypothetical protein	-	8e-1	At5g35900	LBD35 (LOB DOMAIN-CONTAINING PROTEIN 35)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.85	PtpAffx.224111.1.S1_at	pmrna42350	hypothetical protein	-	2e+0	At5g38050	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.84	Ptp.5397.1.A1_at	CV250958	hypothetical protein	-	1e+0	At5g15320	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.84	Ptp.3432.1.S1_at	DN503100	-	-	1e+0	At1g44575	NPQ4 (NONPHOTOCHEMICAL QUENCHING)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.8	98.4	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.3	96.9	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.2	96.8	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.8	94.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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