Co-expression analysis

Gene ID	PtpAffx.50616.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g29575: AFP3 (ABI FIVE BINDING PROTEIN 3) (HF=1e-10)
Module size	8 genes
NF	0.59
%ile	89.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	71.9	0.84	PtpAffx.50616.1.A1_at	CV239482	hypothetical protein	-	1e-10	At3g29575	AFP3 (ABI FIVE BINDING PROTEIN 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.78	95.1	0.89	PtpAffx.8561.1.S1_a_at	BU819526	stress-induced hydrophobic peptide	-	7e-5	At3g05880	RCI2A (RARE-COLD-INDUCIBLE 2A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.89	PtpAffx.214035.1.S1_at	pmrna27330	hypothetical protein	-	9e-28	At1g23070	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.93	PtpAffx.8561.2.A1_at	CV245535	stress-induced hydrophobic peptide	-	3e+0	At2g03600	ATUPS3 (Arabidopsis thaliana ureide permease 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.89	PtpAffx.203544.1.S1_at	pmrna7035	hypothetical protein	-	2e-23	At3g54510	early-responsive to dehydration protein-related / ERD protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.89	PtpAffx.6328.1.S1_at	CK115102	hypothetical protein	-	6e+0	At3g59390	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.90	PtpAffx.2551.1.S1_at	CV270107	hypothetical protein	-	2e-4	At1g27990	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.89	Ptp.6096.1.S1_s_at	CK113386	hypothetical protein	-	1e+0	At5g24155	squalene monooxygenase, putative / squalene epoxidase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.4	95.9	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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