Co-expression analysis

Gene ID	PtpAffx.50507.1.A1_s_at
Gene name
Homology with Arabidopsis	Similar to At5g55290: ATP synthase subunit H family protein (HF=2e-18)
Module size	6 genes
NF	0.29
%ile	51.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.47	74.6	0.94	PtpAffx.50507.1.A1_s_at	CV247777	-	-	2e-18	At5g55290	ATP synthase subunit H family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.95	PtpAffx.9076.1.A1_at	CV252324	hypothetical protein	-	1e-30	At2g43070	protease-associated (PA) domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.95	PtpAffx.98987.1.S1_s_at	DN500449	hypothetical protein	-	1e+0	At5g16453	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.95	Ptp.4967.1.A1_at	CV228163	hypothetical protein	-	2e-20	At5g51430	EYE (EMBRYO YELLOW)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.95	PtpAffx.12848.1.S1_at	DN484571	hypothetical protein	-	3e-11	At2g37410	ATTIM17-2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.95	Ptp.273.1.S1_at	CK087938	hypothetical protein	-	2e-24	At3g42050	vacuolar ATP synthase subunit H family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	96.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.2	93.5	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5	90.9	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the grape gene, 1611174_at, orthologous to the query gene, PtpAffx.50507.1.A1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1611174_at	At5g55290	hypothetical protein LOC100255548	-	3e-10	At4g26710	ATP synthase subunit H family protein	O.I.	H.G.	S.X.	Please select
0.61	83.2	1609432_at	At5g55290	similar to sec61beta family protein	-	8e-23	At3g60540	sec61beta family protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	1612654_at	At5g55290	hypothetical protein LOC100256926	-	3e-19	At5g55290	ATP synthase subunit H family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	1608755_at	At5g55290	similar to vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5)	-	3e-85	At4g34720	AVA-P1	O.I.	H.G.	S.X.	Please select
0.40	57.7	1616404_at	At5g55290	hypothetical protein LOC100260060	-	4e-7	At2g19680	mitochondrial ATP synthase g subunit family protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	1620441_s_at	At5g55290	similar to vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5)	-	3e-85	At4g34720	AVA-P1	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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