Co-expression analysis

Gene ID PtpAffx.50507.1.A1_s_at
Gene name
Homology with ArabidopsisSimilar to At5g55290: ATP synthase subunit H family protein (HF=2e-18)
Module size 6 genes
NF 0.29
%ile 51.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4774.60.94PtpAffx.50507.1.A1_s_atCV247777--2e-18At5g55290ATP synthase subunit H family proteinO.I.H.G.S.X.
0.5582.20.95PtpAffx.9076.1.A1_atCV252324hypothetical protein-1e-30At2g43070protease-associated (PA) domain-containing proteinO.I.H.G.S.X.
0.3661.60.95PtpAffx.98987.1.S1_s_atDN500449hypothetical protein-1e+0At5g16453-O.I.H.G.S.X.
0.3357.50.95Ptp.4967.1.A1_atCV228163hypothetical protein-2e-20At5g51430EYE (EMBRYO YELLOW)O.I.H.G.S.X.
0.1423.50.95PtpAffx.12848.1.S1_atDN484571hypothetical protein-3e-11At2g37410ATTIM17-2O.I.H.G.S.X.
0.1321.60.95Ptp.273.1.S1_atCK087938hypothetical protein-2e-24At3g42050vacuolar ATP synthase subunit H family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.296.8GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.896.4GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.393.7GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
3.293.5GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.992.5GSM244432non infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.691.3GSM244439Mixed infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.590.9GSM244435Mlp infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.289.3GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.5109.3.S1_at, orthologous to the query gene, PtpAffx.50507.1.A1_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5374.9Ta.5109.3.S1_atAt5g55290Plasma membrane H+-ATPase subunit H-9e-6At4g26710ATP synthase subunit H family proteinO.I.H.G.S.X.
0.6383.1TaAffx.32764.1.S1_atAt5g55290--6e-76At1g78920AVP2 (ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2)O.I.H.G.S.X.
0.6383.1Ta.23295.3.S1_atAt5g55290--3e+0At5g62720integral membrane HPP family proteinO.I.H.G.S.X.
0.6383.1Ta.11.2.A1_atAt5g55290Cathepsin B-7e-6At1g02305cathepsin B-like cysteine protease, putativeO.I.H.G.S.X.
0.6182.0TaAffx.5378.1.S1_atAt5g55290--3e+0At4g37630CYCD5O.I.H.G.S.X.
0.5576.8TaAffx.128896.6.A1_atAt5g55290--8e-26Atcg00780-O.I.H.G.S.X.
0.5072.4TaAffx.4746.1.S1_atAt5g55290--5e-1At5g10360EMB3010 (embryo defective 3010)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays



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