Co-expression analysis

Gene ID	PtpAffx.50507.1.A1_s_at
Gene name
Homology with Arabidopsis	Similar to At5g55290: ATP synthase subunit H family protein (HF=2e-18)
Module size	6 genes
NF	0.29
%ile	51.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.47	74.6	0.94	PtpAffx.50507.1.A1_s_at	CV247777	-	-	2e-18	At5g55290	ATP synthase subunit H family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.95	PtpAffx.9076.1.A1_at	CV252324	hypothetical protein	-	1e-30	At2g43070	protease-associated (PA) domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.95	PtpAffx.98987.1.S1_s_at	DN500449	hypothetical protein	-	1e+0	At5g16453	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.95	Ptp.4967.1.A1_at	CV228163	hypothetical protein	-	2e-20	At5g51430	EYE (EMBRYO YELLOW)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.95	PtpAffx.12848.1.S1_at	DN484571	hypothetical protein	-	3e-11	At2g37410	ATTIM17-2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.95	Ptp.273.1.S1_at	CK087938	hypothetical protein	-	2e-24	At3g42050	vacuolar ATP synthase subunit H family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	96.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.2	93.5	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5	90.9	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the soybean gene, Gma.7079.1.S1_s_at, orthologous to the query gene, PtpAffx.50507.1.A1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	98.9	Gma.7079.1.S1_s_at	At5g55290	-	-	2e-5	At4g26710	ATP synthase subunit H family protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	GmaAffx.93080.1.S1_s_at	At5g55290	-	-	2e-8	At1g62020	coatomer protein complex, subunit alpha, putative	O.I.	H.G.	S.X.	Please select
0.36	50.8	GmaAffx.80549.1.S1_at	At5g55290	-	-	4e-41	At5g16300	-	O.I.	H.G.	S.X.	Please select
0.31	42.2	Gma.16725.1.S1_at	At5g55290	-	-	5e-25	At5g03455	CDC25	O.I.	H.G.	S.X.	Please select
0.30	40.4	GmaAffx.92307.1.S1_s_at	At5g55290	-	-	4e-9	At1g51160	synbindin, putative	O.I.	H.G.	S.X.	Please select
0.28	39.0	Gma.11105.1.A1_at	At5g55290	-	-	1e+0	At1g63105	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	Gma.7017.2.S1_s_at	At5g55290	-	-	3e+0	At4g22570	APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3)	O.I.	H.G.	S.X.	Please select
0.27	35.7	GmaAffx.87789.1.S1_at	At5g55290	-	-	5e-13	At4g36720	HVA22K (HVA22-LIKE PROTEIN K)	O.I.	H.G.	S.X.	Please select
0.26	33.9	Gma.14137.2.S1_at	At5g55290	-	-	8e-5	At5g55550	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.25	32.6	Gma.17594.3.S1_at	At5g55290	-	-	2e-12	At3g23660	transport protein, putative	O.I.	H.G.	S.X.	Please select
0.25	32.6	GmaAffx.73646.1.S1_at	At5g55290	-	-	3e-14	At1g51740	SYP81 (SYNTAXIN OF PLANTS 81)	O.I.	H.G.	S.X.	Please select
0.25	32.6	Gma.10779.2.S1_at	At5g55290	-	-	2e-1	At1g55546	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.9	Gma.17713.1.S1_at	At5g55290	-	-	1e-63	At4g32530	vacuolar ATP synthase, putative / V-ATPase, putative	O.I.	H.G.	S.X.	Please select
0.23	29.9	GmaAffx.11530.3.S1_at	At5g55290	-	-	2e-12	At4g22320	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.9	GmaAffx.45359.2.S1_at	At5g55290	-	-	1e-60	At4g28540	CKL6 (CASEIN KINASE I-LIKE 6)	O.I.	H.G.	S.X.	Please select
0.21	26.6	Gma.5712.1.S1_s_at	At5g55290	-	-	2e+0	At3g12260	complex 1 family protein / LVR family protein	O.I.	H.G.	S.X.	Please select
0.20	25.1	GmaAffx.88197.1.S1_at	At5g55290	-	-	2e-19	At5g11710	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	O.I.	H.G.	S.X.	Please select
0.18	22.3	GmaAffx.80776.3.S1_at	At5g55290	-	-	1e-34	At1g70160	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	22.3	GmaAffx.47025.1.S1_at	At5g55290	-	-	6e-27	At5g11980	conserved oligomeric Golgi complex component-related / COG complex component-related	O.I.	H.G.	S.X.	Please select
0.18	22.3	GmaAffx.9084.1.S1_at	At5g55290	-	-	4e-1	At5g46250	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.17	21.2	GmaAffx.91756.1.S1_at	At5g55290	Calmodulin (SCaM-2)	-	2e-85	At3g43810	CAM7 (CALMODULIN 7)	O.I.	H.G.	S.X.	Please select
0.16	19.7	Gma.2731.5.S1_at	At5g55290	-	-	3e-17	At3g10860	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	O.I.	H.G.	S.X.	Please select
0.15	18.7	GmaAffx.90260.1.S1_at	At5g55290	-	-	5e-136	At1g50370	serine/threonine protein phosphatase, putative	O.I.	H.G.	S.X.	Please select
0.14	17.5	Gma.7259.2.S1_at	At5g55290	-	-	7e+0	At5g45428	CPuORF24 (Conserved peptide upstream open reading frame 24)	O.I.	H.G.	S.X.	Please select
0.13	16.3	Gma.739.1.S1_at	At5g55290	-	-	6e-15	At5g27490	integral membrane Yip1 family protein	O.I.	H.G.	S.X.	Please select
0.13	16.3	Gma.11223.1.S1_at	At5g55290	-	-	4e-169	At3g28710	H+-transporting two-sector ATPase, putative	O.I.	H.G.	S.X.	Please select
0.13	16.3	GmaAffx.92831.1.S1_s_at	At5g55290	-	-	1e+0	At5g43460	lesion inducing protein-related	O.I.	H.G.	S.X.	Please select
0.12	15.1	Gma.4991.1.S1_at	At5g55290	-	-	3e-30	At1g01230	ORMDL family protein	O.I.	H.G.	S.X.	Please select
0.12	15.1	GmaAffx.70076.1.S1_at	At5g55290	-	-	1e-6	At1g32260	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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