CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.50507.1.A1_s_at

Gene name
Homology with Arabidopsis Similar to At5g55290: ATP synthase subunit H family protein (HF=2e-18)

Module size 6 genes

NF 0.29

%ile 51.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.47 74.6 0.94 PtpAffx.50507.1.A1_s_at CV247777 - - 2e-18 At5g55290 ATP synthase subunit H family protein O.I. H.G. S.X.
0.55 82.2 0.95 PtpAffx.9076.1.A1_at CV252324 hypothetical protein - 1e-30 At2g43070 protease-associated (PA) domain-containing protein O.I. H.G. S.X.
0.36 61.6 0.95 PtpAffx.98987.1.S1_s_at DN500449 hypothetical protein - 1e+0 At5g16453 - O.I. H.G. S.X.
0.33 57.5 0.95 Ptp.4967.1.A1_at CV228163 hypothetical protein - 2e-20 At5g51430 EYE (EMBRYO YELLOW) O.I. H.G. S.X.
0.14 23.5 0.95 PtpAffx.12848.1.S1_at DN484571 hypothetical protein - 3e-11 At2g37410 ATTIM17-2 O.I. H.G. S.X.
0.13 21.6 0.95 Ptp.273.1.S1_at CK087938 hypothetical protein - 2e-24 At3g42050 vacuolar ATP synthase subunit H family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.47	74.6	0.94	PtpAffx.50507.1.A1_s_at	CV247777	-	-	2e-18	At5g55290	ATP synthase subunit H family protein	O.I.	H.G.	S.X.
0.55	82.2	0.95	PtpAffx.9076.1.A1_at	CV252324	hypothetical protein	-	1e-30	At2g43070	protease-associated (PA) domain-containing protein	O.I.	H.G.	S.X.
0.36	61.6	0.95	PtpAffx.98987.1.S1_s_at	DN500449	hypothetical protein	-	1e+0	At5g16453	-	O.I.	H.G.	S.X.
0.33	57.5	0.95	Ptp.4967.1.A1_at	CV228163	hypothetical protein	-	2e-20	At5g51430	EYE (EMBRYO YELLOW)	O.I.	H.G.	S.X.
0.14	23.5	0.95	PtpAffx.12848.1.S1_at	DN484571	hypothetical protein	-	3e-11	At2g37410	ATTIM17-2	O.I.	H.G.	S.X.
0.13	21.6	0.95	Ptp.273.1.S1_at	CK087938	hypothetical protein	-	2e-24	At3g42050	vacuolar ATP synthase subunit H family protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.2 96.8 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.8 96.4 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM244437 Mmd infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.2 93.5 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM244432 non infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6 91.3 GSM244439 Mixed infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5 90.9 GSM244435 Mlp infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2 89.3 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
5.2	96.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.2	93.5	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5	90.9	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g55290, orthologous to the query gene, PtpAffx.50507.1.A1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.89 94.6 At5g55290 835622 ATP synthase subunit H family protein F:hydrogen ion transmembrane transporter activity;P:ATP hydrolysis coupled proton transport;C:vacuole;MPOF O.I. H.G. S.X.
0.48 62.5 At5g48810 834939 CB5-D (CYTOCHROME B5 ISOFORM D) Encodes a cytochrome b5 isoform that localizes to the ER. The C-terminal portion of the protein appears to be capable of inserting into a plant microsomal membrane in vitro and the protein appears to be subject to glycosylation. O.I. H.G. S.X.
0.46 59.8 At4g02620 828221 vacuolar ATPase subunit F family protein F:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:plasma membrane, vacuole;MFOPA O.I. H.G. S.X.
0.42 53.9 At2g03680 814896 SPR1 (SPIRAL1) The SPR1 gene encodes a plant-specific 12-kD protein which has a repeated motif at both ends, separated by a predicted rod-like domain, suggesting that it may act as an intermolecular linker. Ubiquitously expressed and belongs to a six-member gene family in Arabidopsis; expressed in transgenic seedlings localized to microtubules within the cortical array, preprophase band, phragmoplast, and mitotic spindle. O.I. H.G. S.X.
0.40 50.8 At1g01230 839331 ORMDL family protein F:molecular_function unknown;P:protein folding;C:integral to membrane, endoplasmic reticulum;MFPO O.I. H.G. S.X.
0.40 50.8 At5g64400 836561 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MFPOB O.I. H.G. S.X.
0.39 48.4 At3g08610 820008 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, respiratory chain complex I;P O.I. H.G. S.X.
0.38 46.7 At2g33470 817912 GLTP1 (glycolipid transfer protein 1) F:glycolipid transporter activity, glycolipid binding;P:glycolipid transport;C:plasma membrane;MFPO O.I. H.G. S.X.
0.37 45.0 At2g20930 816627 - F:molecular_function unknown;P:transport, ER to Golgi vesicle-mediated transport;C:intracellular;MFOP O.I. H.G. S.X.
0.36 43.6 At5g59880 836110 ADF3 (ACTIN DEPOLYMERIZING FACTOR 3) Encodes actin depolymerizing factor 3 (ADF3). O.I. H.G. S.X.
0.35 41.6 At3g03070 821133 NADH-ubiquinone oxidoreductase-related F:unknown;P:unknown;C:mitochondrion;MFPO O.I. H.G. S.X.
0.35 41.6 At2g47170 819330 ARF1A1C Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. Members of this family are known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct. O.I. H.G. S.X.
0.35 41.6 At2g47380 819351 cytochrome c oxidase subunit Vc family protein / COX5C family protein F:cytochrome-c oxidase activity;P:unknown;C:mitochondrion;P O.I. H.G. S.X.
0.34 39.8 At2g28430 817391 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.32 35.7 At4g37830 829939 cytochrome c oxidase-related F:cytochrome-c oxidase activity;P:unknown;C:mitochondrion;MPO O.I. H.G. S.X.
0.31 33.8 At4g38920 830047 ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3) F:ATPase activity;P:ATP synthesis coupled proton transport;C:vacuole;MOFBPA O.I. H.G. S.X.
0.30 32.1 At4g26710 828778 ATP synthase subunit H family protein F:hydrogen ion transmembrane transporter activity;P:ATP hydrolysis coupled proton transport;C:vacuole;MPOF O.I. H.G. S.X.
0.28 30.3 At1g14400 838002 UBC1 (UBIQUITIN CARRIER PROTEIN 1) ubiquitin carrier protein O.I. H.G. S.X.
0.28 30.3 At1g49140 841337 NADH-ubiquinone oxidoreductase-related F:unknown;P:photorespiration;C:mitochondrion, mitochondrial membrane, respiratory chain complex I;FPM O.I. H.G. S.X.
0.27 26.2 At3g51040 824268 RTH (RTE1-HOMOLOG) Encodes a protein of 231 amino acids with 51% identity to RTE1 over 209 amino acids. O.I. H.G. S.X.
0.27 26.2 At4g32470 829382 ubiquinol-cytochrome C reductase complex 14 kDa protein, putative F:ubiquinol-cytochrome-c reductase activity;P:mitochondrial electron transport, ubiquinol to cytochrome c;C:mitochondrion, plasma membrane, plastid, mitochondrial respiratory chain complex III, membrane;MPFO O.I. H.G. S.X.
0.23 19.3 At1g35160 840403 GF14 PHI (GF14 PROTEIN PHI CHAIN) GF14 protein phi chain member of 14-3-3 protein family. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1 O.I. H.G. S.X.
0.20 14.4 At1g69960 843333 PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A) type 2A serine/threonine protein phosphatase (PP2A) mRNA, O.I. H.G. S.X.
0.18 11.4 At5g51400 835214 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	O.I.	H.G.	S.X.
0.89	94.6	At5g55290	835622	ATP synthase subunit H family protein	F:hydrogen ion transmembrane transporter activity;P:ATP hydrolysis coupled proton transport;C:vacuole;MPOF	O.I.	H.G.	S.X.
0.48	62.5	At5g48810	834939	CB5-D (CYTOCHROME B5 ISOFORM D)	Encodes a cytochrome b5 isoform that localizes to the ER. The C-terminal portion of the protein appears to be capable of inserting into a plant microsomal membrane in vitro and the protein appears to be subject to glycosylation.	O.I.	H.G.	S.X.
0.46	59.8	At4g02620	828221	vacuolar ATPase subunit F family protein	F:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:plasma membrane, vacuole;MFOPA	O.I.	H.G.	S.X.
0.42	53.9	At2g03680	814896	SPR1 (SPIRAL1)	The SPR1 gene encodes a plant-specific 12-kD protein which has a repeated motif at both ends, separated by a predicted rod-like domain, suggesting that it may act as an intermolecular linker. Ubiquitously expressed and belongs to a six-member gene family in Arabidopsis; expressed in transgenic seedlings localized to microtubules within the cortical array, preprophase band, phragmoplast, and mitotic spindle.	O.I.	H.G.	S.X.
0.40	50.8	At1g01230	839331	ORMDL family protein	F:molecular_function unknown;P:protein folding;C:integral to membrane, endoplasmic reticulum;MFPO	O.I.	H.G.	S.X.
0.40	50.8	At5g64400	836561	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;MFPOB	O.I.	H.G.	S.X.
0.39	48.4	At3g08610	820008	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, respiratory chain complex I;P	O.I.	H.G.	S.X.
0.38	46.7	At2g33470	817912	GLTP1 (glycolipid transfer protein 1)	F:glycolipid transporter activity, glycolipid binding;P:glycolipid transport;C:plasma membrane;MFPO	O.I.	H.G.	S.X.
0.37	45.0	At2g20930	816627	-	F:molecular_function unknown;P:transport, ER to Golgi vesicle-mediated transport;C:intracellular;MFOP	O.I.	H.G.	S.X.
0.36	43.6	At5g59880	836110	ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)	Encodes actin depolymerizing factor 3 (ADF3).	O.I.	H.G.	S.X.
0.35	41.6	At3g03070	821133	NADH-ubiquinone oxidoreductase-related	F:unknown;P:unknown;C:mitochondrion;MFPO	O.I.	H.G.	S.X.
0.35	41.6	At2g47170	819330	ARF1A1C	Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. Members of this family are known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.	O.I.	H.G.	S.X.
0.35	41.6	At2g47380	819351	cytochrome c oxidase subunit Vc family protein / COX5C family protein	F:cytochrome-c oxidase activity;P:unknown;C:mitochondrion;P	O.I.	H.G.	S.X.
0.34	39.8	At2g28430	817391	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.32	35.7	At4g37830	829939	cytochrome c oxidase-related	F:cytochrome-c oxidase activity;P:unknown;C:mitochondrion;MPO	O.I.	H.G.	S.X.
0.31	33.8	At4g38920	830047	ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)	F:ATPase activity;P:ATP synthesis coupled proton transport;C:vacuole;MOFBPA	O.I.	H.G.	S.X.
0.30	32.1	At4g26710	828778	ATP synthase subunit H family protein	F:hydrogen ion transmembrane transporter activity;P:ATP hydrolysis coupled proton transport;C:vacuole;MPOF	O.I.	H.G.	S.X.
0.28	30.3	At1g14400	838002	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	ubiquitin carrier protein	O.I.	H.G.	S.X.
0.28	30.3	At1g49140	841337	NADH-ubiquinone oxidoreductase-related	F:unknown;P:photorespiration;C:mitochondrion, mitochondrial membrane, respiratory chain complex I;FPM	O.I.	H.G.	S.X.
0.27	26.2	At3g51040	824268	RTH (RTE1-HOMOLOG)	Encodes a protein of 231 amino acids with 51% identity to RTE1 over 209 amino acids.	O.I.	H.G.	S.X.
0.27	26.2	At4g32470	829382	ubiquinol-cytochrome C reductase complex 14 kDa protein, putative	F:ubiquinol-cytochrome-c reductase activity;P:mitochondrial electron transport, ubiquinol to cytochrome c;C:mitochondrion, plasma membrane, plastid, mitochondrial respiratory chain complex III, membrane;MPFO	O.I.	H.G.	S.X.
0.23	19.3	At1g35160	840403	GF14 PHI (GF14 PROTEIN PHI CHAIN)	GF14 protein phi chain member of 14-3-3 protein family. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1	O.I.	H.G.	S.X.
0.20	14.4	At1g69960	843333	PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A)	type 2A serine/threonine protein phosphatase (PP2A) mRNA,	O.I.	H.G.	S.X.
0.18	11.4	At5g51400	835214	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	PtpAffx.50507.1.A1_s_at
Gene name
Homology with Arabidopsis	Similar to At5g55290: ATP synthase subunit H family protein (HF=2e-18)
Module size	6 genes
NF	0.29
%ile	51.1

Co-expression analysis

Gene ID PtpAffx.50507.1.A1_s_at Gene name Homology with ArabidopsisSimilar to At5g55290: ATP synthase subunit H family protein (HF=2e-18) Module size 6 genes NF 0.29 %ile 51.1

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.50507.1.A1_s_at

Gene name
Homology with Arabidopsis Similar to At5g55290: ATP synthase subunit H family protein (HF=2e-18)

Module size 6 genes

NF 0.29

%ile 51.1

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays