Co-expression analysis

Gene ID	PtpAffx.50347.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g36730: eukaryotic translation initiation factor 5, putative / eIF-5, putative (HF=2e-21)
Module size	7 genes
NF	0.57
%ile	87.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.96	PtpAffx.50347.1.S1_at	CX172783	hypothetical protein	-	2e-21	At1g36730	eukaryotic translation initiation factor 5, putative / eIF-5, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.97	PtpAffx.217533.1.S1_at	pmrna32835	hypothetical protein	-	5e-53	At3g51270	ATP binding / catalytic/ protein serine/threonine kinase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.97	PtpAffx.213645.1.S1_s_at	pmrna26652	hypothetical protein	-	2e-61	At1g80930	MIF4G domain-containing protein / MA3 domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.97	PtpAffx.131114.3.S1_s_at	BU874626	hypothetical protein	-	1e-87	At2g23080	casein kinase II alpha chain, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.96	PtpAffx.148075.1.S1_s_at	CN517822	hypothetical protein	-	4e-1	At3g24800	PRT1 (PROTEOLYSIS 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.96	PtpAffx.40987.1.A1_at	CV235485	hypothetical protein	-	3e-16	At5g08500	transmembrane CLPTM1 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.97	PtpAffx.142690.2.S1_s_at	CX185710	hypothetical protein	-	5e-34	At3g03340	UNE6 (unfertilized embryo sac 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.0	95.3	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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