Co-expression analysis

Gene ID	PtpAffx.50263.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g10920: KELP (HF=4e+0)
Module size	22 genes
NF	0.23
%ile	41.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	91.5	0.86	PtpAffx.50263.1.A1_at	CV252613	-	-	4e+0	At4g10920	KELP	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.89	PtpAffx.209962.1.S1_at	pmrna19647	hypothetical protein	-	5e-1	At4g30590	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.90	PtpAffx.1628.1.S1_at	CK092783	-	-	1e-45	At5g07070	CIPK2 (CBL-INTERACTING PROTEIN KINASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.90	PtpAffx.208240.1.S1_at	pmrna16403	hypothetical protein	-	3e-2	At3g57810	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.91	Ptp.1205.1.S1_at	CK090114	-	-	4e-1	At1g53330	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.90	PtpAffx.2690.2.S1_at	BP930140	-	-	3e-12	At4g13640	UNE16 (unfertilized embryo sac 16)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.90	PtpAffx.90328.1.S1_at	DN491760	hypothetical protein	-	2e-1	At1g55780	metal ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.92	PtpAffx.95031.1.A1_at	BP936487	hypothetical protein	-	2e-10	At1g11880	transferase, transferring hexosyl groups	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.91	Ptp.7866.2.S1_a_at	DN490485	-	-	4e+0	At3g20450	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.90	Ptp.7871.1.S1_at	CV261392	hypothetical protein	-	1e-35	At5g36170	HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.88	PtpAffx.127519.1.A1_at	CV255210	-	-	1e-1	At2g05330	speckle-type POZ protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.91	PtpAffx.71886.3.S1_a_at	CF937025	methionine sulfoxide reductase type /// methionine sulfoxide reductase type	-	4e-7	At5g07470	PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.91	PtpAffx.50312.2.S1_at	CV250164	-	-	1e+0	At5g11230	organic anion transmembrane transporter	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.91	PtpAffx.132329.2.A1_a_at	CV260627	CPK related protein kinase 1	-	6e-1	At2g45850	DNA-binding family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.92	PtpAffx.210909.1.S1_at	pmrna21432	hypothetical protein	-	1e-86	At3g05350	aminopeptidase/ hydrolase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.91	PtpAffx.2104.1.S1_at	BP933396	outward rectifying potassium channel	-	1e+0	At4g09960	STK (SEEDSTICK)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.91	Ptp.6099.1.S1_at	CV244592	hypothetical protein	-	6e-32	At2g20890	PSB29	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.90	PtpAffx.38716.1.S1_at	DN491215	hypothetical protein	-	2e-62	At5g51020	CRL (CRUMPLED LEAF)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.92	PtpAffx.208801.1.S1_at	pmrna17449	hypothetical protein	-	3e-29	At5g20220	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.91	PtpAffx.128871.1.S1_at	CV271857	hypothetical protein	-	3e-2	At3g25680	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.93	PtpAffx.24152.1.A1_at	CV272169	hypothetical protein	-	7e-21	At5g19210	DEAD/DEAH box helicase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.93	PtpAffx.213479.1.S1_s_at	pmrna26352	hypothetical protein	-	5e-31	At2g37050	kinase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	94.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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