Co-expression analysis

Gene ID	PtpAffx.5021.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g54360: TAF6B4 (TBP-ASSOCIATED FACTOR 6B4) (HF=1e-4)
Module size	6 genes
NF	0.27
%ile	47.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.94	PtpAffx.5021.1.S1_at	CK090757	hypothetical protein	-	1e-4	At1g54360	TAF6B4 (TBP-ASSOCIATED FACTOR 6B4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.94	PtpAffx.18825.6.A1_at	CV255492	hypothetical protein	-	3e-23	At5g12190	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.94	PtpAffx.9962.1.S1_a_at	CV244590	hypothetical protein	-	3e+0	At4g18580	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.95	Ptp.1492.1.S1_s_at	CV271929	hypothetical protein	-	4e-33	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.94	PtpAffx.219972.1.S1_at	pmrna36173	hypothetical protein	-	1e-38	At5g47490	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.95	PtpAffx.141227.1.A1_s_at	CV272556	hypothetical protein	-	6e-19	At5g48520	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.8	94.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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