CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.50176.2.S1_a_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At2g26830: emb1187 (embryo defective 1187) (HF=1e-16)

Module size 6 genes

NF 0.77

%ile 98.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 97.0 0.94 PtpAffx.50176.2.S1_a_at CV256175 hypothetical protein - 1e-16 At2g26830 emb1187 (embryo defective 1187) O.I. H.G. S.X.
0.91 99.2 0.94 PtpAffx.212573.1.S1_at pmrna24632 hypothetical protein - 2e-40 At5g53050 hydrolase, alpha/beta fold family protein O.I. H.G. S.X.
0.73 93.6 0.92 PtpAffx.152322.1.A1_at DN487182 - - 4e-35 At2g26830 emb1187 (embryo defective 1187) O.I. H.G. S.X.
0.60 86.0 0.95 Ptp.8056.1.S1_at DN498527 hypothetical protein - 1e-7 At5g64300 ATGCH O.I. H.G. S.X.
0.55 82.2 0.94 PtpAffx.149678.1.A1_at AJ771832 hypothetical protein - 3e-50 At5g64300 ATGCH O.I. H.G. S.X.
0.50 78.6 0.94 PtpAffx.210312.1.S1_at pmrna20295 CPK related kinase 4 - 1e-18 At5g24430 calcium-dependent protein kinase, putative / CDPK, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.7 96.3 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.6 94.5 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the maize gene, Zm.14917.1.A1_at, orthologous to the query gene, PtpAffx.50176.2.S1_a_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 88.2 Zm.14917.1.A1_at At2g26830 - - 9e-1 At1g04330 unknown protein O.I. H.G. S.X.
0.91 99.0 Zm.4095.1.A1_at At2g26830 hypothetical protein LOC100279282 - 3e+0 At1g77682 - O.I. H.G. S.X.
0.67 85.8 Zm.13637.1.S1_at At2g26830 hypothetical protein LOC100274373 - 3e+0 At5g62700 TUB3 O.I. H.G. S.X.
0.53 69.1 Zm.12118.1.A1_at At2g26830 hypothetical protein LOC100277272 - 3e-1 At2g46330 AGP16 (ARABINOGALACTAN PROTEIN 16) O.I. H.G. S.X.
0.35 38.9 Zm.7274.1.S1_at At2g26830 - - 1e+0 At4g19630 heat shock factor protein-related / heat shock transcription factor-related O.I. H.G. S.X.
0.33 36.0 Zm.2647.1.A1_at At2g26830 hypothetical protein LOC100192886 - 1e-4 At1g22990 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera

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