Co-expression analysis

Gene ID	PtpAffx.50176.2.S1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g26830: emb1187 (embryo defective 1187) (HF=1e-16)
Module size	6 genes
NF	0.77
%ile	98.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	97.0	0.94	PtpAffx.50176.2.S1_a_at	CV256175	hypothetical protein	-	1e-16	At2g26830	emb1187 (embryo defective 1187)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.91	99.2	0.94	PtpAffx.212573.1.S1_at	pmrna24632	hypothetical protein	-	2e-40	At5g53050	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.92	PtpAffx.152322.1.A1_at	DN487182	-	-	4e-35	At2g26830	emb1187 (embryo defective 1187)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.95	Ptp.8056.1.S1_at	DN498527	hypothetical protein	-	1e-7	At5g64300	ATGCH	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.94	PtpAffx.149678.1.A1_at	AJ771832	hypothetical protein	-	3e-50	At5g64300	ATGCH	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.94	PtpAffx.210312.1.S1_at	pmrna20295	CPK related kinase 4	-	1e-18	At5g24430	calcium-dependent protein kinase, putative / CDPK, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.7	96.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.6	94.5	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the grape gene, 1617570_at, orthologous to the query gene, PtpAffx.50176.2.S1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.6	1617570_at	At2g26830	hypothetical protein LOC100256116	-	2e-11	At2g26830	emb1187 (embryo defective 1187)	O.I.	H.G.	S.X.	Please select
0.46	66.5	1606499_at	At2g26830	hypothetical protein LOC100261449	-	4e-30	At4g39850	PXA1 (PEROXISOMAL ABC TRANSPORTER 1)	O.I.	H.G.	S.X.	Please select
0.38	53.6	1607239_at	At2g26830	hypothetical protein LOC100251048	-	1e+0	At1g06060	RanBPM-related	O.I.	H.G.	S.X.	Please select
0.30	39.4	1617268_at	At2g26830	hypothetical protein LOC100259631	-	4e-13	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	O.I.	H.G.	S.X.	Please select
0.25	30.5	1608226_at	At2g26830	hypothetical protein LOC100262695	-	7e-37	At1g60430	ARPC3 (actin-related protein C3)	O.I.	H.G.	S.X.	Please select
0.24	28.7	1609475_at	At2g26830	hypothetical protein LOC100257746	-	7e-24	At1g72810	threonine synthase, putative	O.I.	H.G.	S.X.	Please select
0.22	25.6	1613472_at	At2g26830	hypothetical protein LOC100249155	-	2e-10	At3g27310	PUX1 (PLANT UBX DOMAIN-CONTAINING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.18	19.4	1620640_s_at	At2g26830	hypothetical protein LOC100267834	-	9e-9	At4g24590	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	1620526_at	At2g26830	hypothetical protein LOC100261578	-	1e-104	At1g54340	ICDH (ISOCITRATE DEHYDROGENASE)	O.I.	H.G.	S.X.	Please select
0.17	18.2	1622114_at	At2g26830	hypothetical protein LOC100265981	-	6e-27	At2g45200	GOS12 (GOLGI SNARE 12)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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