CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.50176.2.S1_a_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At2g26830: emb1187 (embryo defective 1187) (HF=1e-16)

Module size 6 genes

NF 0.77

%ile 98.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 97.0 0.94 PtpAffx.50176.2.S1_a_at CV256175 hypothetical protein - 1e-16 At2g26830 emb1187 (embryo defective 1187) O.I. H.G. S.X.
0.91 99.2 0.94 PtpAffx.212573.1.S1_at pmrna24632 hypothetical protein - 2e-40 At5g53050 hydrolase, alpha/beta fold family protein O.I. H.G. S.X.
0.73 93.6 0.92 PtpAffx.152322.1.A1_at DN487182 - - 4e-35 At2g26830 emb1187 (embryo defective 1187) O.I. H.G. S.X.
0.60 86.0 0.95 Ptp.8056.1.S1_at DN498527 hypothetical protein - 1e-7 At5g64300 ATGCH O.I. H.G. S.X.
0.55 82.2 0.94 PtpAffx.149678.1.A1_at AJ771832 hypothetical protein - 3e-50 At5g64300 ATGCH O.I. H.G. S.X.
0.50 78.6 0.94 PtpAffx.210312.1.S1_at pmrna20295 CPK related kinase 4 - 1e-18 At5g24430 calcium-dependent protein kinase, putative / CDPK, putative O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.83	97.0	0.94	PtpAffx.50176.2.S1_a_at	CV256175	hypothetical protein	-	1e-16	At2g26830	emb1187 (embryo defective 1187)	O.I.	H.G.	S.X.
0.91	99.2	0.94	PtpAffx.212573.1.S1_at	pmrna24632	hypothetical protein	-	2e-40	At5g53050	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.
0.73	93.6	0.92	PtpAffx.152322.1.A1_at	DN487182	-	-	4e-35	At2g26830	emb1187 (embryo defective 1187)	O.I.	H.G.	S.X.
0.60	86.0	0.95	Ptp.8056.1.S1_at	DN498527	hypothetical protein	-	1e-7	At5g64300	ATGCH	O.I.	H.G.	S.X.
0.55	82.2	0.94	PtpAffx.149678.1.A1_at	AJ771832	hypothetical protein	-	3e-50	At5g64300	ATGCH	O.I.	H.G.	S.X.
0.50	78.6	0.94	PtpAffx.210312.1.S1_at	pmrna20295	CPK related kinase 4	-	1e-18	At5g24430	calcium-dependent protein kinase, putative / CDPK, putative	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.7 96.3 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.6 94.5 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
4.7	96.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.6	94.5	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g26830, orthologous to the query gene, PtpAffx.50176.2.S1_a_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At2g26830 817224 emb1187 (embryo defective 1187) F:phosphotransferase activity, alcohol group as acceptor, kinase activity;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MOBFP O.I. H.G. S.X.
0.52 67.4 At5g10790 830946 UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) Encodes a ubiquitin-specific protease. O.I. H.G. S.X.
0.51 66.3 At4g37880 829944 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MFOP O.I. H.G. S.X.
0.49 63.5 At1g17730 838349 VPS46.1 (VACUOLAR PROTEIN SORTING 46.1) F:unknown;P:vesicle-mediated transport;C:cellular_component unknown;MPFOA O.I. H.G. S.X.
0.48 62.5 At1g10940 837637 SNRK2.4 (SNF1-RELATED PROTEIN KINASE 2.4) Encodes a plant protein kinase similar to the calcium/calmodulin-dependent protein kinase subfamily and the SNF1 kinase subfamily (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Kinase activity of its homolog in tobacco is induced by hyperosmotic condition within 1 minute. O.I. H.G. S.X.
0.47 61.2 At3g25800 822171 PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) one of three genes encoding the protein phosphatase 2A regulatory subunit O.I. H.G. S.X.
0.47 61.2 At3g54860 824651 vacuolar protein sorting protein, putative Homologous to yeast VPS33. Forms a complex with VCL1 and AtVPS11. Involved in vacuolar biogenesis. O.I. H.G. S.X.
0.46 59.8 At4g04860 825823 DER2.2 (DERLIN-2.2) F:unknown;P:proteolysis;C:cellular_component unknown;MOFP O.I. H.G. S.X.
0.46 59.8 At1g80400 844380 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. H.G. S.X.
0.46 59.8 At1g68070 843135 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:plasma membrane;PMOFVB O.I. H.G. S.X.
0.46 59.8 At1g69980 843335 unknown protein F:unknown;P:unknown;C:endomembrane system;P O.I. H.G. S.X.
0.45 58.3 At1g60430 842338 ARPC3 (actin-related protein C3) F:structural molecule activity;P:actin filament organization;C:Arp2/3 protein complex;MFOP O.I. H.G. S.X.
0.45 58.3 At4g05000 825842 VPS28-2 F:transporter activity;P:transport;C:ESCRT I complex;MFPO O.I. H.G. S.X.
0.44 57.2 At1g54115 841851 CCX4 (CATION CALCIUM EXCHANGER 4) Involved in cation (Na and K) homeostasis. O.I. H.G. S.X.
0.43 55.3 At1g69340 843266 appr-1-p processing enzyme family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOPFAV O.I. H.G. S.X.
0.43 55.3 At5g09850 830845 transcription elongation factor-related F:protein binding, transcription regulator activity, DNA binding;P:transcription;C:cytosol;MPOFBV O.I. H.G. S.X.
0.42 53.9 At5g64813 836603 LIP1 (Light Insensitive Period1) The LIP1 gene encodes a small GTPase that influences the light input pathway of the plant circadian network. An MBP:LIP1 fusion protein has GTP hydrolyzing abilities in vitro. In plants, LIP1 seems to play a negative role in regulating circadian period that can be suppressed by light. LIP1 also seems to negatively affect light-pulse-dependent resetting of the clock, especially during the first portion of the subjective evening. LIP1 expression levels are not significantly affected by the circadian clock in seedlings grown under LL conditions. The levels of the YFP:LIP1 protein expressed under the control of the 35S promoter, shows a low amplitude variation, with protein levels peaking near the beginning of subjective night under LL conditions. In hypocotyl epidermal cells of dark and light-grown seedlings, a YFP:LIP1 fusion protein can be seen in the cytoplasm and the nucleus, and does not cluster in nuclear speckles. LIP1 may also be involved in photomorphogenesis. O.I. H.G. S.X.
0.42 53.9 At3g05010 819662 transmembrane protein, putative F:molecular_function unknown;P:biological_process unknown;C:membrane;MPBO O.I. H.G. S.X.
0.42 53.9 At1g24350 839051 - F:unknown;P:biological_process unknown;C:unknown;BOP O.I. H.G. S.X.
0.41 52.4 At3g23540 821933 - F:unknown;P:unknown;C:cellular_component unknown;OBMFPA O.I. H.G. S.X.
0.41 52.4 At5g47310 834778 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. H.G. S.X.
0.41 52.4 At3g48070 823962 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:chloroplast;MFPOB O.I. H.G. S.X.
0.40 50.8 At2g27600 817306 SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) Encodes a SKD1 (Suppressor of K+ Transport Growth Defect1) homolog. Localized to the cytoplasm and to multivesicular endosomes. Involved in multivesicular endosome function. O.I. H.G. S.X.
0.40 50.8 At1g17280 838300 UBC34 (ubiquitin-conjugating enzyme 34) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPV O.I. H.G. S.X.
0.40 50.8 At4g00170 828017 vesicle-associated membrane family protein / VAMP family protein F:structural molecule activity;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. H.G. S.X.
0.40 50.8 At1g79975 - - - O.I. H.G. S.X.
0.39 48.4 At5g61500 836271 ATG3 F:molecular_function unknown;P:autophagy;C:cellular_component unknown;MFOP O.I. H.G. S.X.
0.39 48.4 At1g71190 843459 SAG18 (SENESCENCE ASSOCIATED GENE 18) Senescence associated gene (SAG). Expression induced by ozone. Encodes a plant-specific protein of unknown function. Based on a personal communication from David Meinke (08/21/2007), this gene is not allelic to TTN4, even though this has been stated previously in a publication. O.I. H.G. S.X.
0.39 48.4 At4g36480 829800 ATLCB1 (LONG-CHAIN BASE1) Encodes the LCB1 subunit of serine palmitoyltransferase. Together with the LCB2 subunit, forms a functional serine palmitoyltransferase complex, which catalyzes the first reaction of sphingolipid biosynthesis. Knockout of LCB1 was embryo lethal. Partial suppression of LCB1 expression led to smaller plants due to reduced cell expansion. O.I. H.G. S.X.
0.39 48.4 At3g01340 821216 protein transport protein SEC13 family protein / WD-40 repeat family protein F:nucleotide binding;P:intracellular protein transport, membrane budding;C:cellular_component unknown;MFBOPA O.I. H.G. S.X.
0.39 48.4 At5g59160 836034 TOPP2 Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers. O.I. H.G. S.X.
0.39 48.4 At3g54840 824649 ARA6 Encodes a novel Rab-like GTP-ase that is localized to the peripheral membrane of the endosome. O.I. H.G. S.X.
0.39 48.4 At1g34190 840318 anac017 (Arabidopsis NAC domain containing protein 17) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POB O.I. H.G. S.X.
0.39 48.4 At5g02040 831904 PRA1.A1 (PRENYLATED RAB ACCEPTOR 1.A1) F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;MPF O.I. H.G. S.X.
0.39 48.4 At5g06260 830513 nucleolar protein-related F:calcium ion binding;P:N-terminal protein myristoylation;C:cellular_component unknown;MOPF O.I. H.G. S.X.
0.38 46.7 At5g25360 832608 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. H.G. S.X.
0.38 46.7 At3g56740 824841 ubiquitin-associated (UBA)/TS-N domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;FMPOB O.I. H.G. S.X.
0.38 46.7 At3g03860 821101 ATAPRL5 (APR-like 5) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group. O.I. H.G. S.X.
0.37 45.0 At1g80950 844435 phospholipid/glycerol acyltransferase family protein F:acyltransferase activity;P:metabolic process;C:endoplasmic reticulum, nucleus;BOMPF O.I. H.G. S.X.
0.37 45.0 At2g29900 817540 presenilin family protein F:molecular_function unknown;P:intracellular signaling cascade;C:integral to membrane, membrane;MOPA O.I. H.G. S.X.
0.37 45.0 At1g72175 843549 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPBV O.I. H.G. S.X.
0.37 45.0 At2g23780 816910 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV O.I. H.G. S.X.
0.37 45.0 At3g03740 821170 ATBPM4 (BTB-POZ and MATH domain 4) F:protein binding;P:biological_process unknown;C:unknown;MPOFV O.I. H.G. S.X.
0.36 43.6 At4g39370 830092 UBP27 (UBIQUITIN-SPECIFIC PROTEASE 27) Encodes a ubiquitin-specific protease. O.I. H.G. S.X.
0.36 43.6 At1g22020 838807 SHM6 (serine hydroxymethyltransferase 6) Encodes a putative serine hydroxymethyltransferase. O.I. H.G. S.X.
0.36 43.6 At4g15415 827211 ATB' GAMMA B' regulatory subunit of PP2A (AtB'gamma) O.I. H.G. S.X.
0.35 41.6 At3g12100 820384 cation efflux family protein / metal tolerance protein, putative F:cation transmembrane transporter activity, efflux transmembrane transporter activity;P:cation transport, response to nematode;C:membrane;BMFOPA O.I. H.G. S.X.
0.35 41.6 At5g08290 830725 YLS8 Encodes Dim1 homolog. O.I. H.G. S.X.
0.35 41.6 At1g09270 837448 IMPA-4 (IMPORTIN ALPHA ISOFORM 4) Protein interacts with Agrobacterium proteins VirD2 and VirE2. O.I. H.G. S.X.
0.35 41.6 At1g56590 842113 clathrin adaptor complexes medium subunit family protein F:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:clathrin vesicle coat, clathrin adaptor complex;MFOP O.I. H.G. S.X.
0.34 39.8 At1g16010 838171 magnesium transporter CorA-like family protein (MRS2-1) F:metal ion transmembrane transporter activity;P:metal ion transport;C:vacuole, membrane;PFOMBA O.I. H.G. S.X.
0.34 39.8 At2g30710 817622 RabGAP/TBC domain-containing protein F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular;MOFP O.I. H.G. S.X.
0.34 39.8 At4g33890 829532 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO O.I. H.G. S.X.
0.34 39.8 At3g09740 820132 SYP71 (SYNTAXIN OF PLANTS 71) syntaxin of plants 71 (SYP71) O.I. H.G. S.X.
0.34 39.8 At5g07270 830618 ankyrin repeat family protein F:ubiquitin-protein ligase activity, protein binding;P:N-terminal protein myristoylation;C:unknown;MOFBPVA O.I. H.G. S.X.
0.34 39.8 At1g12340 837788 - F:molecular_function unknown;P:intracellular signaling cascade;C:membrane;MFPO O.I. H.G. S.X.
0.34 39.8 At2g22090 816744 UBP1 interacting protein 1a (UBA1a) encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. As with UBP1, transient overexpression of UBA1a in protoplasts increases the steady-state levels of reporter mRNAs in a promoter-dependent manner. Along with UBP1 and UBA2a, it may act as a component of a complex recognizing U-rich sequences in plant 3'-UTRs and contributing to the stabilization of mRNAs in the nucleus. O.I. H.G. S.X.
0.34 39.8 At3g01150 821129 PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1) Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination. O.I. H.G. S.X.
0.34 39.8 At5g05700 830454 ATE1 (ARGININE-TRNA PROTEIN TRANSFERASE 1) Encodes an arginyl-tRNA:protein transferase (ATE1), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6). PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. Mutants of ATE1 also display delayed leaf senescence. O.I. H.G. S.X.
0.33 38.1 At3g28710 822502 H+-transporting two-sector ATPase, putative F:hydrogen ion transmembrane transporter activity, proton-transporting ATPase activity, rotational mechanism;P:proton transport, ATP synthesis coupled proton transport;C:vacuolar membrane, plasma membrane, vacuole, plant-type vacuole;MFOPAB O.I. H.G. S.X.
0.33 38.1 At1g71860 843516 PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) Encodes a protein with tyrosine phosphatase activity that is downregulated in response to cold and upregulated in response to salt stress. O.I. H.G. S.X.
0.33 38.1 At2g45140 819122 PVA12 (PLANT VAP HOMOLOG 12) Encodes a Plant VAMP-Associated protein that localizes to the ER and binds to the sitosterol-binding protein ORP3a. The WFDE motif in ORP3a appears to be important for this direct interaction. Mutation of this motif causes ORP3a to relocalize to the Golgi and cytosol. The interaction between PVA12 and ORP3a does not appear to be sterol-dependent. O.I. H.G. S.X.
0.32 35.7 At3g19980 821536 ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) Encodes catalytic subunit of serine/threonine protein phosphatase 2A. It can associate with phytochromes A and B in vitro. Mutant plants display an accelerated flowering phenotype. O.I. H.G. S.X.
0.32 35.7 At1g10430 837583 PP2A-2 Encodes one of two isoforms of the catalytic subunit of protein phosphatase 2A. O.I. H.G. S.X.
0.32 35.7 At3g05090 819671 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPAV O.I. H.G. S.X.
0.31 33.8 At4g32530 829388 vacuolar ATP synthase, putative / V-ATPase, putative F:ATPase activity;P:ATP synthesis coupled proton transport;C:vacuole;MFOPBA O.I. H.G. S.X.
0.31 33.8 At4g17270 827441 Mo25 family protein F:binding;P:biological_process unknown;C:plasma membrane;MFPO O.I. H.G. S.X.
0.30 32.1 At4g33650 829506 DRP3A (DYNAMIN-RELATED PROTEIN 3A) Encodes a protein with high sequence similarity to the dynamin superfamily. Among those members ADL2 was most closely related to Dnm1p of yeast and likely a member of the Vps1p subfamily. Widely expressed in various tissues with highest expression in flower tissues. Localizes to the chloroplast, mitochondrion and peroxisome. Involved in peroxisome and mitochondria fission in combination with DRP3B. O.I. H.G. S.X.
0.30 32.1 At5g49950 835059 embryogenesis-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFP O.I. H.G. S.X.
0.30 32.1 At1g13320 837892 PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) one of three genes encoding the 65 kDa regulatory subunit of protein phosphatase 2A (PP2A) O.I. H.G. S.X.
0.30 32.1 At5g58060 835918 YKT61 member of YKT6 Gene Family O.I. H.G. S.X.
0.30 32.1 At5g18190 831937 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MBOPFVA O.I. H.G. S.X.
0.30 32.1 At4g15475 827219 F-box family protein (FBL4) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;MPOFBV O.I. H.G. S.X.
0.29 30.3 At3g61710 825344 autophagy protein Apg6 family F:molecular_function unknown;P:autophagy;C:unknown;MOFBPVA O.I. H.G. S.X.
0.29 30.3 At1g02130 837023 ARA-5 (ARABIDOPSIS RAS 5) Belongs to the Rab1 GTPase subfamily. This small GTP-binding protein is required in ER to Golgi transportation. O.I. H.G. S.X.
0.29 30.3 At3g19460 821480 reticulon family protein (RTNLB11) F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPOF O.I. H.G. S.X.
0.29 30.3 At4g36630 829815 EMB2754 (EMBRYO DEFECTIVE 2754) F:small GTPase regulator activity, binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MFOP O.I. H.G. S.X.
0.28 30.3 At1g14570 838019 UBX domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOB O.I. H.G. S.X.
0.28 30.3 At1g77140 844050 VPS45 (VACUOLAR PROTEIN SORTING 45) A peripheral membrane protein that associates with microsomal membranes, likely to function in the transport of proteins to the vacuole. It is a member of Sec1p protein family. It may be involved in the regulation of vesicle fusion reactions through interaction with t-SNAREs at the Golgi trans face. O.I. H.G. S.X.
0.28 30.3 At5g35980 833590 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol;MOPFBVA O.I. H.G. S.X.
0.28 30.3 At4g00660 828042 DEAD/DEAH box helicase, putative F:helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:unknown;C:unknown;BOMFPAV O.I. H.G. S.X.
0.28 30.3 At1g71900 843521 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOB O.I. H.G. S.X.
0.27 26.2 At5g51880 835263 iron ion binding / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, iron ion binding;P:protein metabolic process;C:cellular_component unknown;FBOPM O.I. H.G. S.X.
0.27 26.2 At4g18060 827531 clathrin binding F:clathrin binding;P:unknown;C:unknown;MOFPB O.I. H.G. S.X.
0.26 24.4 At2g21600 816698 ATRER1B Key player of retrieval of ER membrane proteins O.I. H.G. S.X.
0.25 22.6 At1g31020 839988 ATO2 (Arabidopsis thioredoxin o2) F:unknown;P:cell redox homeostasis;C:unknown;BOMPFAV O.I. H.G. S.X.
0.25 22.6 At2g31710 817727 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.23 19.3 At1g50370 841459 serine/threonine protein phosphatase, putative F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:cellular_component unknown;MOFPBAV O.I. H.G. S.X.
0.23 19.3 At4g12590 826872 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, endoplasmic reticulum;MFOP O.I. H.G. S.X.
0.23 19.3 At1g35160 840403 GF14 PHI (GF14 PROTEIN PHI CHAIN) GF14 protein phi chain member of 14-3-3 protein family. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1 O.I. H.G. S.X.
0.22 17.5 At1g60780 842372 HAP13 (HAPLESS 13) F:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:clathrin vesicle coat, clathrin adaptor complex;MFOP O.I. H.G. S.X.
0.22 17.5 At3g59770 825146 SAC9 Encodes a phosphoinositide phosphatase. The sac9 null mutant accumulates elevated levels of PtdIns(4,5)P2 and Ins(1,4,5)P3. The mutant plants have characteristics of constitutive stress responses. O.I. H.G. S.X.
0.22 17.5 At1g22300 838837 GRF10 (GENERAL REGULATORY FACTOR 10) Encodes a 14-3-3 protein. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1 O.I. H.G. S.X.
0.21 15.8 At4g24490 828551 protein prenyltransferase F:protein prenyltransferase activity;P:response to cadmium ion;C:unknown;MOFBPAV O.I. H.G. S.X.
0.19 12.7 At3g22845 821856 emp24/gp25L/p24 protein-related F:unknown;P:transport;C:vacuole;MFPO O.I. H.G. S.X.
0.18 11.4 At5g16280 831488 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;MFOPV O.I. H.G. S.X.
0.18 11.4 At5g36230 833620 eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein F:binding, translation initiation factor activity;P:regulation of translational initiation;C:membrane;MPFOV O.I. H.G. S.X.
0.17 10.2 At3g22990 821873 LFR (LEAF AND FLOWER RELATED) Armadillo-repeat containing protein. Involved in leaf and flower development. Located in nucleus. Broadly expressed throughout vegetative and floral tissues. O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	O.I.	H.G.	S.X.
1.00	100.0	At2g26830	817224	emb1187 (embryo defective 1187)	F:phosphotransferase activity, alcohol group as acceptor, kinase activity;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MOBFP	O.I.	H.G.	S.X.
0.52	67.4	At5g10790	830946	UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22)	Encodes a ubiquitin-specific protease.	O.I.	H.G.	S.X.
0.51	66.3	At4g37880	829944	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MFOP	O.I.	H.G.	S.X.
0.49	63.5	At1g17730	838349	VPS46.1 (VACUOLAR PROTEIN SORTING 46.1)	F:unknown;P:vesicle-mediated transport;C:cellular_component unknown;MPFOA	O.I.	H.G.	S.X.
0.48	62.5	At1g10940	837637	SNRK2.4 (SNF1-RELATED PROTEIN KINASE 2.4)	Encodes a plant protein kinase similar to the calcium/calmodulin-dependent protein kinase subfamily and the SNF1 kinase subfamily (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Kinase activity of its homolog in tobacco is induced by hyperosmotic condition within 1 minute.	O.I.	H.G.	S.X.
0.47	61.2	At3g25800	822171	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	one of three genes encoding the protein phosphatase 2A regulatory subunit	O.I.	H.G.	S.X.
0.47	61.2	At3g54860	824651	vacuolar protein sorting protein, putative	Homologous to yeast VPS33. Forms a complex with VCL1 and AtVPS11. Involved in vacuolar biogenesis.	O.I.	H.G.	S.X.
0.46	59.8	At4g04860	825823	DER2.2 (DERLIN-2.2)	F:unknown;P:proteolysis;C:cellular_component unknown;MOFP	O.I.	H.G.	S.X.
0.46	59.8	At1g80400	844380	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	O.I.	H.G.	S.X.
0.46	59.8	At1g68070	843135	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:plasma membrane;PMOFVB	O.I.	H.G.	S.X.
0.46	59.8	At1g69980	843335	unknown protein	F:unknown;P:unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.45	58.3	At1g60430	842338	ARPC3 (actin-related protein C3)	F:structural molecule activity;P:actin filament organization;C:Arp2/3 protein complex;MFOP	O.I.	H.G.	S.X.
0.45	58.3	At4g05000	825842	VPS28-2	F:transporter activity;P:transport;C:ESCRT I complex;MFPO	O.I.	H.G.	S.X.
0.44	57.2	At1g54115	841851	CCX4 (CATION CALCIUM EXCHANGER 4)	Involved in cation (Na and K) homeostasis.	O.I.	H.G.	S.X.
0.43	55.3	At1g69340	843266	appr-1-p processing enzyme family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOPFAV	O.I.	H.G.	S.X.
0.43	55.3	At5g09850	830845	transcription elongation factor-related	F:protein binding, transcription regulator activity, DNA binding;P:transcription;C:cytosol;MPOFBV	O.I.	H.G.	S.X.
0.42	53.9	At5g64813	836603	LIP1 (Light Insensitive Period1)	The LIP1 gene encodes a small GTPase that influences the light input pathway of the plant circadian network. An MBP:LIP1 fusion protein has GTP hydrolyzing abilities in vitro. In plants, LIP1 seems to play a negative role in regulating circadian period that can be suppressed by light. LIP1 also seems to negatively affect light-pulse-dependent resetting of the clock, especially during the first portion of the subjective evening. LIP1 expression levels are not significantly affected by the circadian clock in seedlings grown under LL conditions. The levels of the YFP:LIP1 protein expressed under the control of the 35S promoter, shows a low amplitude variation, with protein levels peaking near the beginning of subjective night under LL conditions. In hypocotyl epidermal cells of dark and light-grown seedlings, a YFP:LIP1 fusion protein can be seen in the cytoplasm and the nucleus, and does not cluster in nuclear speckles. LIP1 may also be involved in photomorphogenesis.	O.I.	H.G.	S.X.
0.42	53.9	At3g05010	819662	transmembrane protein, putative	F:molecular_function unknown;P:biological_process unknown;C:membrane;MPBO	O.I.	H.G.	S.X.
0.42	53.9	At1g24350	839051	-	F:unknown;P:biological_process unknown;C:unknown;BOP	O.I.	H.G.	S.X.
0.41	52.4	At3g23540	821933	-	F:unknown;P:unknown;C:cellular_component unknown;OBMFPA	O.I.	H.G.	S.X.
0.41	52.4	At5g47310	834778	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	H.G.	S.X.
0.41	52.4	At3g48070	823962	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:chloroplast;MFPOB	O.I.	H.G.	S.X.
0.40	50.8	At2g27600	817306	SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)	Encodes a SKD1 (Suppressor of K+ Transport Growth Defect1) homolog. Localized to the cytoplasm and to multivesicular endosomes. Involved in multivesicular endosome function.	O.I.	H.G.	S.X.
0.40	50.8	At1g17280	838300	UBC34 (ubiquitin-conjugating enzyme 34)	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPV	O.I.	H.G.	S.X.
0.40	50.8	At4g00170	828017	vesicle-associated membrane family protein / VAMP family protein	F:structural molecule activity;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	H.G.	S.X.
0.40	50.8	At1g79975	-	-	-	O.I.	H.G.	S.X.
0.39	48.4	At5g61500	836271	ATG3	F:molecular_function unknown;P:autophagy;C:cellular_component unknown;MFOP	O.I.	H.G.	S.X.
0.39	48.4	At1g71190	843459	SAG18 (SENESCENCE ASSOCIATED GENE 18)	Senescence associated gene (SAG). Expression induced by ozone. Encodes a plant-specific protein of unknown function. Based on a personal communication from David Meinke (08/21/2007), this gene is not allelic to TTN4, even though this has been stated previously in a publication.	O.I.	H.G.	S.X.
0.39	48.4	At4g36480	829800	ATLCB1 (LONG-CHAIN BASE1)	Encodes the LCB1 subunit of serine palmitoyltransferase. Together with the LCB2 subunit, forms a functional serine palmitoyltransferase complex, which catalyzes the first reaction of sphingolipid biosynthesis. Knockout of LCB1 was embryo lethal. Partial suppression of LCB1 expression led to smaller plants due to reduced cell expansion.	O.I.	H.G.	S.X.
0.39	48.4	At3g01340	821216	protein transport protein SEC13 family protein / WD-40 repeat family protein	F:nucleotide binding;P:intracellular protein transport, membrane budding;C:cellular_component unknown;MFBOPA	O.I.	H.G.	S.X.
0.39	48.4	At5g59160	836034	TOPP2	Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.	O.I.	H.G.	S.X.
0.39	48.4	At3g54840	824649	ARA6	Encodes a novel Rab-like GTP-ase that is localized to the peripheral membrane of the endosome.	O.I.	H.G.	S.X.
0.39	48.4	At1g34190	840318	anac017 (Arabidopsis NAC domain containing protein 17)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POB	O.I.	H.G.	S.X.
0.39	48.4	At5g02040	831904	PRA1.A1 (PRENYLATED RAB ACCEPTOR 1.A1)	F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;MPF	O.I.	H.G.	S.X.
0.39	48.4	At5g06260	830513	nucleolar protein-related	F:calcium ion binding;P:N-terminal protein myristoylation;C:cellular_component unknown;MOPF	O.I.	H.G.	S.X.
0.38	46.7	At5g25360	832608	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	H.G.	S.X.
0.38	46.7	At3g56740	824841	ubiquitin-associated (UBA)/TS-N domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;FMPOB	O.I.	H.G.	S.X.
0.38	46.7	At3g03860	821101	ATAPRL5 (APR-like 5)	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group.	O.I.	H.G.	S.X.
0.37	45.0	At1g80950	844435	phospholipid/glycerol acyltransferase family protein	F:acyltransferase activity;P:metabolic process;C:endoplasmic reticulum, nucleus;BOMPF	O.I.	H.G.	S.X.
0.37	45.0	At2g29900	817540	presenilin family protein	F:molecular_function unknown;P:intracellular signaling cascade;C:integral to membrane, membrane;MOPA	O.I.	H.G.	S.X.
0.37	45.0	At1g72175	843549	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPBV	O.I.	H.G.	S.X.
0.37	45.0	At2g23780	816910	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV	O.I.	H.G.	S.X.
0.37	45.0	At3g03740	821170	ATBPM4 (BTB-POZ and MATH domain 4)	F:protein binding;P:biological_process unknown;C:unknown;MPOFV	O.I.	H.G.	S.X.
0.36	43.6	At4g39370	830092	UBP27 (UBIQUITIN-SPECIFIC PROTEASE 27)	Encodes a ubiquitin-specific protease.	O.I.	H.G.	S.X.
0.36	43.6	At1g22020	838807	SHM6 (serine hydroxymethyltransferase 6)	Encodes a putative serine hydroxymethyltransferase.	O.I.	H.G.	S.X.
0.36	43.6	At4g15415	827211	ATB' GAMMA	B' regulatory subunit of PP2A (AtB'gamma)	O.I.	H.G.	S.X.
0.35	41.6	At3g12100	820384	cation efflux family protein / metal tolerance protein, putative	F:cation transmembrane transporter activity, efflux transmembrane transporter activity;P:cation transport, response to nematode;C:membrane;BMFOPA	O.I.	H.G.	S.X.
0.35	41.6	At5g08290	830725	YLS8	Encodes Dim1 homolog.	O.I.	H.G.	S.X.
0.35	41.6	At1g09270	837448	IMPA-4 (IMPORTIN ALPHA ISOFORM 4)	Protein interacts with Agrobacterium proteins VirD2 and VirE2.	O.I.	H.G.	S.X.
0.35	41.6	At1g56590	842113	clathrin adaptor complexes medium subunit family protein	F:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:clathrin vesicle coat, clathrin adaptor complex;MFOP	O.I.	H.G.	S.X.
0.34	39.8	At1g16010	838171	magnesium transporter CorA-like family protein (MRS2-1)	F:metal ion transmembrane transporter activity;P:metal ion transport;C:vacuole, membrane;PFOMBA	O.I.	H.G.	S.X.
0.34	39.8	At2g30710	817622	RabGAP/TBC domain-containing protein	F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular;MOFP	O.I.	H.G.	S.X.
0.34	39.8	At4g33890	829532	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	H.G.	S.X.
0.34	39.8	At3g09740	820132	SYP71 (SYNTAXIN OF PLANTS 71)	syntaxin of plants 71 (SYP71)	O.I.	H.G.	S.X.
0.34	39.8	At5g07270	830618	ankyrin repeat family protein	F:ubiquitin-protein ligase activity, protein binding;P:N-terminal protein myristoylation;C:unknown;MOFBPVA	O.I.	H.G.	S.X.
0.34	39.8	At1g12340	837788	-	F:molecular_function unknown;P:intracellular signaling cascade;C:membrane;MFPO	O.I.	H.G.	S.X.
0.34	39.8	At2g22090	816744	UBP1 interacting protein 1a (UBA1a)	encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. As with UBP1, transient overexpression of UBA1a in protoplasts increases the steady-state levels of reporter mRNAs in a promoter-dependent manner. Along with UBP1 and UBA2a, it may act as a component of a complex recognizing U-rich sequences in plant 3'-UTRs and contributing to the stabilization of mRNAs in the nucleus.	O.I.	H.G.	S.X.
0.34	39.8	At3g01150	821129	PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1)	Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination.	O.I.	H.G.	S.X.
0.34	39.8	At5g05700	830454	ATE1 (ARGININE-TRNA PROTEIN TRANSFERASE 1)	Encodes an arginyl-tRNA:protein transferase (ATE1), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6). PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. Mutants of ATE1 also display delayed leaf senescence.	O.I.	H.G.	S.X.
0.33	38.1	At3g28710	822502	H+-transporting two-sector ATPase, putative	F:hydrogen ion transmembrane transporter activity, proton-transporting ATPase activity, rotational mechanism;P:proton transport, ATP synthesis coupled proton transport;C:vacuolar membrane, plasma membrane, vacuole, plant-type vacuole;MFOPAB	O.I.	H.G.	S.X.
0.33	38.1	At1g71860	843516	PTP1 (PROTEIN TYROSINE PHOSPHATASE 1)	Encodes a protein with tyrosine phosphatase activity that is downregulated in response to cold and upregulated in response to salt stress.	O.I.	H.G.	S.X.
0.33	38.1	At2g45140	819122	PVA12 (PLANT VAP HOMOLOG 12)	Encodes a Plant VAMP-Associated protein that localizes to the ER and binds to the sitosterol-binding protein ORP3a. The WFDE motif in ORP3a appears to be important for this direct interaction. Mutation of this motif causes ORP3a to relocalize to the Golgi and cytosol. The interaction between PVA12 and ORP3a does not appear to be sterol-dependent.	O.I.	H.G.	S.X.
0.32	35.7	At3g19980	821536	ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)	Encodes catalytic subunit of serine/threonine protein phosphatase 2A. It can associate with phytochromes A and B in vitro. Mutant plants display an accelerated flowering phenotype.	O.I.	H.G.	S.X.
0.32	35.7	At1g10430	837583	PP2A-2	Encodes one of two isoforms of the catalytic subunit of protein phosphatase 2A.	O.I.	H.G.	S.X.
0.32	35.7	At3g05090	819671	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPAV	O.I.	H.G.	S.X.
0.31	33.8	At4g32530	829388	vacuolar ATP synthase, putative / V-ATPase, putative	F:ATPase activity;P:ATP synthesis coupled proton transport;C:vacuole;MFOPBA	O.I.	H.G.	S.X.
0.31	33.8	At4g17270	827441	Mo25 family protein	F:binding;P:biological_process unknown;C:plasma membrane;MFPO	O.I.	H.G.	S.X.
0.30	32.1	At4g33650	829506	DRP3A (DYNAMIN-RELATED PROTEIN 3A)	Encodes a protein with high sequence similarity to the dynamin superfamily. Among those members ADL2 was most closely related to Dnm1p of yeast and likely a member of the Vps1p subfamily. Widely expressed in various tissues with highest expression in flower tissues. Localizes to the chloroplast, mitochondrion and peroxisome. Involved in peroxisome and mitochondria fission in combination with DRP3B.	O.I.	H.G.	S.X.
0.30	32.1	At5g49950	835059	embryogenesis-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFP	O.I.	H.G.	S.X.
0.30	32.1	At1g13320	837892	PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3)	one of three genes encoding the 65 kDa regulatory subunit of protein phosphatase 2A (PP2A)	O.I.	H.G.	S.X.
0.30	32.1	At5g58060	835918	YKT61	member of YKT6 Gene Family	O.I.	H.G.	S.X.
0.30	32.1	At5g18190	831937	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MBOPFVA	O.I.	H.G.	S.X.
0.30	32.1	At4g15475	827219	F-box family protein (FBL4)	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;MPOFBV	O.I.	H.G.	S.X.
0.29	30.3	At3g61710	825344	autophagy protein Apg6 family	F:molecular_function unknown;P:autophagy;C:unknown;MOFBPVA	O.I.	H.G.	S.X.
0.29	30.3	At1g02130	837023	ARA-5 (ARABIDOPSIS RAS 5)	Belongs to the Rab1 GTPase subfamily. This small GTP-binding protein is required in ER to Golgi transportation.	O.I.	H.G.	S.X.
0.29	30.3	At3g19460	821480	reticulon family protein (RTNLB11)	F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPOF	O.I.	H.G.	S.X.
0.29	30.3	At4g36630	829815	EMB2754 (EMBRYO DEFECTIVE 2754)	F:small GTPase regulator activity, binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MFOP	O.I.	H.G.	S.X.
0.28	30.3	At1g14570	838019	UBX domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOB	O.I.	H.G.	S.X.
0.28	30.3	At1g77140	844050	VPS45 (VACUOLAR PROTEIN SORTING 45)	A peripheral membrane protein that associates with microsomal membranes, likely to function in the transport of proteins to the vacuole. It is a member of Sec1p protein family. It may be involved in the regulation of vesicle fusion reactions through interaction with t-SNAREs at the Golgi trans face.	O.I.	H.G.	S.X.
0.28	30.3	At5g35980	833590	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol;MOPFBVA	O.I.	H.G.	S.X.
0.28	30.3	At4g00660	828042	DEAD/DEAH box helicase, putative	F:helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:unknown;C:unknown;BOMFPAV	O.I.	H.G.	S.X.
0.28	30.3	At1g71900	843521	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOB	O.I.	H.G.	S.X.
0.27	26.2	At5g51880	835263	iron ion binding / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, iron ion binding;P:protein metabolic process;C:cellular_component unknown;FBOPM	O.I.	H.G.	S.X.
0.27	26.2	At4g18060	827531	clathrin binding	F:clathrin binding;P:unknown;C:unknown;MOFPB	O.I.	H.G.	S.X.
0.26	24.4	At2g21600	816698	ATRER1B	Key player of retrieval of ER membrane proteins	O.I.	H.G.	S.X.
0.25	22.6	At1g31020	839988	ATO2 (Arabidopsis thioredoxin o2)	F:unknown;P:cell redox homeostasis;C:unknown;BOMPFAV	O.I.	H.G.	S.X.
0.25	22.6	At2g31710	817727	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.23	19.3	At1g50370	841459	serine/threonine protein phosphatase, putative	F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:cellular_component unknown;MOFPBAV	O.I.	H.G.	S.X.
0.23	19.3	At4g12590	826872	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, endoplasmic reticulum;MFOP	O.I.	H.G.	S.X.
0.23	19.3	At1g35160	840403	GF14 PHI (GF14 PROTEIN PHI CHAIN)	GF14 protein phi chain member of 14-3-3 protein family. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1	O.I.	H.G.	S.X.
0.22	17.5	At1g60780	842372	HAP13 (HAPLESS 13)	F:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:clathrin vesicle coat, clathrin adaptor complex;MFOP	O.I.	H.G.	S.X.
0.22	17.5	At3g59770	825146	SAC9	Encodes a phosphoinositide phosphatase. The sac9 null mutant accumulates elevated levels of PtdIns(4,5)P2 and Ins(1,4,5)P3. The mutant plants have characteristics of constitutive stress responses.	O.I.	H.G.	S.X.
0.22	17.5	At1g22300	838837	GRF10 (GENERAL REGULATORY FACTOR 10)	Encodes a 14-3-3 protein. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1	O.I.	H.G.	S.X.
0.21	15.8	At4g24490	828551	protein prenyltransferase	F:protein prenyltransferase activity;P:response to cadmium ion;C:unknown;MOFBPAV	O.I.	H.G.	S.X.
0.19	12.7	At3g22845	821856	emp24/gp25L/p24 protein-related	F:unknown;P:transport;C:vacuole;MFPO	O.I.	H.G.	S.X.
0.18	11.4	At5g16280	831488	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;MFOPV	O.I.	H.G.	S.X.
0.18	11.4	At5g36230	833620	eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein	F:binding, translation initiation factor activity;P:regulation of translational initiation;C:membrane;MPFOV	O.I.	H.G.	S.X.
0.17	10.2	At3g22990	821873	LFR (LEAF AND FLOWER RELATED)	Armadillo-repeat containing protein. Involved in leaf and flower development. Located in nucleus. Broadly expressed throughout vegetative and floral tissues.	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	PtpAffx.50176.2.S1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g26830: emb1187 (embryo defective 1187) (HF=1e-16)
Module size	6 genes
NF	0.77
%ile	98.4

Co-expression analysis

Gene ID PtpAffx.50176.2.S1_a_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At2g26830: emb1187 (embryo defective 1187) (HF=1e-16) Module size 6 genes NF 0.77 %ile 98.4

Co-expressed genes

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Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.50176.2.S1_a_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At2g26830: emb1187 (embryo defective 1187) (HF=1e-16)

Module size 6 genes

NF 0.77

%ile 98.4

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays