Co-expression analysis

Gene ID PtpAffx.49841.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g24260: basic helix-loop-helix (bHLH) family protein (HF=9e-24)
Module size 6 genes
NF 0.49
%ile 78.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5380.50.93PtpAffx.49841.1.A1_atCV243029hypothetical protein-9e-24At2g24260basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.7393.60.93PtpAffx.205763.1.S1_atpmrna11385hypothetical protein-5e-6At3g54790armadillo/beta-catenin repeat family protein / U-box domain-containing proteinO.I.H.G.S.X.
0.6791.10.92Ptp.7528.1.S1_s_atCK102716SAUR family protein-4e-1At1g09795ATATP-PRT2 (ATP PHOSPHORIBOSYL TRANSFERASE 2)O.I.H.G.S.X.
0.4471.90.94PtpAffx.212425.1.S1_atpmrna24339hypothetical protein-5e-20At2g42400VOZ2 (VASCULAR PLANT ONE ZINC FINGER PROTEIN 2)O.I.H.G.S.X.
0.3357.50.94PtpAffx.14893.1.S1_atCV276587hypothetical protein-2e+0At5g14910heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.2543.60.93Ptp.4775.1.A1_atCV242132hypothetical protein-6e-16At5g40440ATMKK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.395.8GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.393.7GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.193.2GSM327403Populus balsamifera_20071015_Etiolated_seedling_6d_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.791.8GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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