Co-expression analysis

Gene ID	PtpAffx.49746.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g48790: mov34 family protein (HF=4e-57)
Module size	18 genes
NF	0.54
%ile	84.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	94.3	0.94	PtpAffx.49746.1.A1_at	CV226295	hypothetical protein	-	4e-57	At1g48790	mov34 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.69	91.5	0.95	PtpAffx.249.93.S1_x_at	BP934988	hypothetical protein	-	0	At5g13490	AAC2 (ADP/ATP carrier 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.68	91.3	0.96	PtpAffx.14238.5.A1_x_at	CV246135	-	-	1e-3	At4g00860	ATOZI1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.96	Ptp.6193.1.S1_at	CV249273	hypothetical protein	-	1e-19	At3g03070	NADH-ubiquinone oxidoreductase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.95	Ptp.654.1.S1_s_at	CX174493	hypothetical protein	-	5e-7	At4g37830	cytochrome c oxidase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.95	Ptp.6819.1.A1_x_at	CV252798	hypothetical protein	-	2e-2	At4g18260	cytochrome B561-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.95	Ptp.5082.1.S1_s_at	CX654214	hypothetical protein	-	8e-41	At3g52880	monodehydroascorbate reductase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.54	80.8	0.96	PtpAffx.7182.3.A1_at	CV253214	-	-	6e-3	At1g79390	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.95	Ptp.4294.1.S1_at	DN499365	hypothetical protein	-	4e-13	At3g03100	NADH:ubiquinone oxidoreductase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.51	78.9	0.96	PtpAffx.51742.1.S1_at	CV243886	hypothetical protein	-	7e-45	At3g02090	mitochondrial processing peptidase beta subunit, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.51	78.9	0.94	Ptp.5570.1.S1_at	CV261857	hypothetical protein	-	5e-47	At3g62560	GTP-binding protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	PtpAffx.153669.1.A1_s_at	CV247741	hypothetical protein	-	1e-12	At5g05370	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	PtpAffx.210302.1.S1_at	pmrna20266	hypothetical protein	-	2e+0	At3g29750	ATP binding / aminoacyl-tRNA ligase/ aspartic-type endopeptidase/ nucleotide binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.95	Ptp.4346.1.S1_at	CV272072	hypothetical protein	-	1e-10	At3g46430	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.45	72.3	0.94	Ptp.1973.1.S1_at	CV278590	hypothetical protein	-	7e-49	At2g33220	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.95	Ptp.2347.1.A1_at	CV280648	hypothetical protein	-	1e-140	At3g27240	cytochrome c1, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.95	PtpAffx.31285.1.A1_at	CV241181	hypothetical protein	-	1e-3	At5g05380	PRA1.B3 (PRENYLATED RAB ACCEPTOR 1.B3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.95	PtpAffx.152227.1.S1_at	CV267586	hypothetical protein	-	6e-62	At1g36050	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	91.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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